Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq136 233 2e-56 seq119 91.5 2e-13 >seq136 Length=1264375 Score = 233 bits (258), Expect = 2e-56 Identities = 970/1502 (65%), Gaps = 64/1502 (4%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || ||||| Sbjct 717516 CTTCATCTCCTCGTTCCACAGTCCTCTCTCCGTCAGGTCCTTGAGCAGATGAGGATTGAC 717457 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | |||| || | ||||||||| ||||||| | |||| Sbjct 717456 GATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTTGTGTAGGCCTCAAT 717397 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | || || || |||| ||| || |||||||||||||| ||||| || |||| || || Sbjct 717396 AGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAG 717337 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTG 110851 ||||| | | || | || ||| ||||| || | | ||||||| | | | Sbjct 717336 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCGCACAGGTC 717277 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAAC 110909 || | || || || |||||||||| |||| || |||||| ||| ||||| | Sbjct 717276 AG-TGGGCGTCTTCT-CCCACATGTCGTACTGGAGGGTGCCCTTGCTGACA--GGAGAGC 717221 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | ||| | || || |||| || | | | |||| || ||||| |||||||||| | Sbjct 717220 CTTCATACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTTGCCTCCAGGGCGG 717161 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 ||| || ||||| |||||||| | || | | || || || ||||| | Sbjct 717160 CGTAGTAGATGGTCTCAAAGATGTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGG 717101 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 || || || || || |||| || | ||| |||||||| | || || || | || Sbjct 717100 GGTGACGCATCAGGATGAAGGCATCAGCCAAACCCTGAACACCGATTCCTATTGGCCGGT 717041 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGG 111148 | ||| | || ||| | | || || | || ||||| | || |||| |||| | Sbjct 717040 GGCGCTTGTTGGACCT-CTCGGCTTCAACCACTGGATAGTAGTTAATGTCTATGATCTTG 716982 Query 111149 TTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGA-AGTTTTTCATAATCAAAAGT 111204 || || || ||| || || ||||| | | | |||| ||||||| | | ||||| || Sbjct 716981 TTCAGGTTCTTG---ACGATTACTTTGGTCACAT-ATGACAGTTTTTTAAAGTCAAAGGT 716926 Query 111205 GCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGT 111264 || ||| |||| ||| | || ||||| || |||| ||| || || ||| Sbjct 716925 CCG---CTCAGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACCGCCAC 716869 Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| | ||||| || | ||||||||| || | |||| | || || || || Sbjct 716868 CTCATCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCC 716809 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| ||||||| || || ||||| |||||||| || || || Sbjct 716808 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACC 716749 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGT 111443 ||| || ||||| |||| | ||| || | ||| || | | | | || || | || | Sbjct 716748 CGTTTCTGTCTGGGATTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACTCGC-T 716690 Query 111444 TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-G 111502 || ||| |||||| ||| || || |||||||| ||||||||||| ||| | || Sbjct 716689 TGACCCTCCCCTCCTTCTCATATTTGGTGTAGAGCTGCTCAAACTCCTC-CCCCCAGCAT 716631 Query 111503 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAA 111560 ||| || || || || || ||||| | |||||||| | | || ||| | Sbjct 716630 TCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCA--GTCTTGGTTGCTCTCCA 716573 Query 111561 CCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCT 111620 | | ||||||||| | ||| || |||||||| | |||| |||||||| || || Sbjct 716572 CTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATAAAAAAGATCTCTGGCCCTTTGCT 716513 Query 111621 CTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGC 111679 | || | ||| ||| || | | ||| ||||| || | | || |||||||||| Sbjct 716512 CATCCTTACCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGC 716454 Query 111680 TCAAGATAGACTGCGATAGATCCC-------TTTCGACGCCCAGCTTGATTTACATAGCG 111732 || || || | |||| | |||| | | | ||||| || | ||||| || Sbjct 716453 TCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTGCCGCCC----TGGTCGACATAACG 716398 Query 111733 CGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCC 111792 ||| ||| ||| | || | ||||| || | | ||||| || | || ||||| || Sbjct 716397 CGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATTAGAGTTGCCGTTTGTGCC 716338 Query 111793 CCGAATACGAGATTTATTGGCTC-----TCACATCATGGATGTG-----CATCCCAATAC 111842 | ||| || |||| | | | ||| | || || || || | Sbjct 716337 -------AGCGATGTA---GCTCCCCGTTGATCTGATGCAGCTGACCGCCACACCGATTC 716288 Query 111843 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 111902 | |||||| | || ||||| | ||||| | | | || || |||| || || | || Sbjct 716287 CTCCAGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGCCTTCAATGC 716228 Query 111903 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 111962 ||| ||||| |||| | |||||||| || |||| ||| || || || || || | Sbjct 716227 TGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCTGCGT 716168 Query 111963 TGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCC 112021 ||||||| || || | ||||| ||||| |||| | |||| || ||| ||||| Sbjct 716167 TGAAGAGTGTAGGAGAAGCGTGGGTGAAC-CACCTCTCTGACAGAAGGTTGTAGGTCTCA 716109 Query 112022 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGT 112081 | | | | ||| || || ||||||||||| | || | ||||| ||||| ||| Sbjct 716108 ATGGCTGCATCGATATCAGTTTTGTGGATGCCGACAGACACTCTCATGAGCATGTGCTGC 716049 Query 112082 GG 112083 || Sbjct 716048 GG 716047 >seq119 Length=8001379 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTT 111333 ||||||||| | || ||||| |||| || ||| || || || |||||||||| Sbjct 7003616 TGTGTACTCCACTATCTCTGTGCATAGATT---ACTGGATTTGATGGTGCCCAAATTCTG 7003560 Query 111334 TTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGT 111393 ||||| |||||| | ||||| || ||||||||||||||||| || || || || || || Sbjct 7003559 CTGGTTGCTCTTCCTATTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCAGTTTCTGT 7003500 Query 111394 CTGTGATTTGAGAATAGCCTTCCAAAC 111420 |||||| | || || || | ||| || Sbjct 7003499 CTGTGACTCGATGATGGCATACCACAC 7003473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028985446400