Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq136 187 3e-42 seq65 91.5 2e-13 seq119 86.0 8e-12 >seq136 Length=1264375 Score = 187 bits (206), Expect = 3e-42 Identities = 851/1328 (64%), Gaps = 30/1328 (2%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||||| |||| ||||| |||| ||| ||||| |||||| Sbjct 717422 TAGATGTTGCTTGTGTAGGCCTCAATAGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 717363 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 ||||||||||| || |||| || |||||||| | | || | | || ||| Sbjct 717362 GCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 717303 Query 118302 TTGAG-AGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 118358 || || ||| ||| ||||| | | | || | | | | || |||||| || ||||| Sbjct 717302 TTCAGCAGCTTCC-AGTCGCACAGGTCAG--TGGGCGTCTTCTCCCACATGTCGTACTGG 717246 Query 118359 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 118418 ||| | || | | | || || || ||| | ||||| || ||||| | | ||| Sbjct 717245 AGGGTGCCCTTGCTGACAGGAGAGCCTTCATACGTCTCGTAGGGGCCGAGCTCGGCGGCC 717186 Query 118419 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATT 118478 | ||| |||| ||||| ||||| |||| || || || ||||| ||| | || | Sbjct 717185 AGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATGTGGATGTTGAGC 717126 Query 118479 GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCT 118538 || |||||| | ||||| | | | || || || || |||| || | ||| Sbjct 717125 AGCTGAGCCTCGGGGCTTTCAAAGGGGTGACGCATCAGGATGAAGGCATCAGCCAAACCC 717066 Query 118539 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGA 118598 || ||||||| || ||||| || || | | | || ||| || || |||| ||| Sbjct 717065 TGAACACCGATTCCTATTGGCCGGTGGCGCTTGTTGGACCTCTCGGCTTCAACCACTGGA 717006 Query 118599 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 118658 || | || | || || | | | || || || ||| || || || || | | |||| Sbjct 717005 TAGTAGTTAATGTCTATGATCTTGTTCAGGTTCTTGACGATTACTTTGGTCACAT-ATGA 716947 Query 118659 -AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 118717 || |||| | ||||| | || ||| |||| ||| | || ||||| || Sbjct 716946 CAGTTTTTTAAAGTCAAAGGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGATGGA 716890 Query 118718 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAA 118777 |||||||||||||| | |||||| | ||||| || | |||||| ||||| | Sbjct 716889 GGCCAGATTACACACCGCCACCTCATCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAG 716830 Query 118778 GTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 118837 ||| | || |||||||||| |||| || || ||| |||| || || || || Sbjct 716829 GTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 716770 Query 118838 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 118897 ||| |||||||| || || ||||| || || ||||| | | ||| || | ||| || | Sbjct 716769 GTACAGCATGTACGGTGTACCCGTTTCTGTCTGGGATTCAATAATGGCATACCACACCTG 716710 Query 118898 GGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTT 118956 ||| || || | || ||| | | |||||| | ||| || || |||||||| | Sbjct 716709 CTGAGCCTTCACCACTCGC-TTGACCCTCCCCTCCTTCTCATATTTGGTGTAGAGCTGCT 716651 Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 119016 ||||||| || ||| | || ||||| || || | || || | ||||||| Sbjct 716650 CAAACTCCTCCCCCCAGCATTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACC 716591 Query 119017 A---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 119073 | ||| | |||| || | ||||||||| | ||| |||||||| || || | | Sbjct 716590 AGTCTTGGTTGCTCTCC---ACTCTCTTCATGAACAAGTCAGGGATCCACAGTGCATAAA 716534 Query 119074 AGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 119132 | ||||| | | | ||| | | | ||| || || || ||||| ||||| Sbjct 716533 AAAGATCTCTGGCCCTTTGCTCATCCTTACCCGTG-TTCTTCTTCAGCTCCAGGAAGTCA 716475 Query 119133 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACC 119188 | | || |||||| || |||||||||| |||| | || || | | || Sbjct 716474 AACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCCGGTCTCTTGTTG-CC 716416 Query 119189 AGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATC 119248 |||||| ||||| | ||| ||| ||| | || | ||||| || | | ||||| Sbjct 716415 GCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGACCATT 716356 Query 119249 GGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCA 119307 || | ||| ||||| || ||| | | || | ||||| | || || Sbjct 716355 AGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTT-GATCTGATGCAGCTGACCGCCA 716297 Query 119308 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 119367 ||| || || || ||| | || ||||| | || || | | | || || | || || | Sbjct 716296 CACCGATTCCTCCAGCCGATTTGGAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGC 716237 Query 119368 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTG 119427 | || || |||| |||| | || | ||||||||||| |||| || |||||| | Sbjct 716236 CTTCAATGCTGTCATCCTTCATGGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGG 716177 Query 119428 TACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCG 119486 | || ||||||||||| || || | |||||| ||||| |||| | |||| || | Sbjct 716176 TTCCTGCGTTGAAGAGTGTAGGAGAAGCGTGGGTGAAC-CACCTCTCTGACAGAAGGTTG 716118 Query 119487 TAGGTCTC 119494 |||||||| Sbjct 716117 TAGGTCTC 716110 >seq65 Length=22759279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||| | Sbjct 20259748 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20259689 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| |||||| || || |||||||||||||| |||||||| ||||| | Sbjct 20259688 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20259629 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 20259628 CCACCACACGCTC 20259616 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||| | Sbjct 20277584 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTTT 20277643 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| |||||| || || |||||||||||||| |||||||| ||||| | Sbjct 20277644 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCGGCGAAGG 20277703 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 20277704 CCACCACACGCTC 20277716 >seq119 Length=8001379 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| || | ||||| | ||||| | | |||||||| |||| ||| ||||| ||||| Sbjct 7004604 TAGATGTTACTGGTGTACGCCTCAATGGATTCATTGTTGCCCAGGATCTGGGCAGTGGAA 7004545 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| ||| || ||||| Sbjct 7004544 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 7004513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432231511040