Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq136 224 1e-53 seq119 89.7 6e-13 >seq136 Length=1264375 Score = 224 bits (248), Expect = 1e-53 Identities = 959/1497 (64%), Gaps = 54/1497 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||| | |||| || || || || ||| | | | Sbjct 716047 CCGCAGCACATGCTCATGAGAGTGTCTGTCGGCATCCACAAAACTGATATCGATGCAGCC 716106 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||| | |||| ||||| ||||| | || || ||||| Sbjct 716107 ATTGAGACCTACAACCTTCTGTCAGAGAGGTG-GTTCACCCACGCTTCTCCTACACTCTT 716165 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || || || |||| || |||||||| | |||| ||||| || Sbjct 716166 CAACGCAGGAACCAACAGGCCACAGCTGTCTAGCTGCTTCCTGCTTGCCATGAAGGATGA 716225 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | || || |||| || || | | | ||||| | ||||| || | |||||| Sbjct 716226 CAGCATTGAAGGCATTTATGACACGCTGAAGCATTGTGCCCTCATCTCCAAATCGGCTGG 716285 Query 104461 GGGTATTGGGATG-----CACATCCATGATGTGA-----GAGCCAATAAATCTCGTATTC 104510 || || || || || | ||| | | | |||| || ||| | Sbjct 716286 AGGAATCGGTGTGGCGGTCAGCTGCATCAGATCAACGGGGAGC---TACATCGCT----- 716337 Query 104511 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 104570 || ||||| || | || ||||| | | || ||||| | || | ||| ||| | Sbjct 716338 --GGCACAAACGGCAACTCTAATGGTCTGGTCCCCATGCTGAGAGTTTACAACAACACGG 716395 Query 104571 CGCGCTATGTAAATCAAGCTGGGCGTCGAAA-------GGGATCTATCGCAGTCTATCTT 104623 |||| ||||| | || ||||| | | | |||| | |||| | || || Sbjct 716396 CGCGTTATGTCGACCA----GGGCGGCAACAAGAGACCGGGAGCCTTCGCCATGTACCTG 716451 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 |||||||||||| || | | || ||||| ||| || ||| ||| | || Sbjct 716452 GAGCCATGGCACTTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGTAAGGAT 716511 Query 104684 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 104743 ||| || | | ||||| || | || || ||||| || || | |||||||||||| Sbjct 716512 GAGCAAAGGGCCAGAGATCTTTTTTATGCACTGTGGATCCCTGACTTGTTCATGAAGAGA 716571 Query 104744 GTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCC 104800 || |||||| | | |||||||| | ||||| || || || || || | Sbjct 716572 GT---GGAGAGCAACCAAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTGGAC 716628 Query 104801 GA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC 104859 || ||| | ||| ||||||||||| || ||||| || || ||| | || || ||| Sbjct 716629 GAATGCTGGGGG-GAGGAGTTTGAGCAGCTCTACACCAAATATGAGAAGGAGGGGAGGGT 716687 Query 104860 GACTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGA 104918 | |||| |||| ||| | |||||| | || ||| | | || || || || | Sbjct 716688 CAA-GCGAGTGGTGAAGGCTCAGCAGGTGTGGTATGCCATTATTGAATCCCAGACAGAAA 716746 Query 104919 CTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATT 104978 | |||||||| |||||||| |||||||||||||| ||| ||||| || || ||||| Sbjct 716747 CGGGTACACCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATC 716806 Query 104979 TGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 105038 |||| ||||| | ||| ||||| |||||||| | |||| || | | |||| Sbjct 716807 TGGGCACCATCAAATGCAGCAACCTCTGCACAGAAATTGTTGAATACACCAGCCACGATG 716866 Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 105098 || ||| |||||||| || || || ||||||||| || ||| || || ||| Sbjct 716867 AGGTGGCGGTGTGTAATCTGGCCTCCATCGCTCTCAACATGTACGTCACCCCTGAG---C 716923 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 ||| ||||| | | ||||||| | || || ||| || ||| ||||| |||| Sbjct 716924 GGACCTTTGACTTTAAAAAACTGTCATATGTGACCAAAGTAATCGTCAAGAACCTGAACA 716983 Query 105159 GAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACC 105218 | || || | || | || || || | || | || || | | | |||| Sbjct 716984 AGATCATAGACATTAACTACTATCCAGTGGTTGAAGCCGAGAGGTCCAACAAGCGCCACC 717043 Query 105219 GTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 105278 | ||||| || |||||||||||||| | || |||| ||||| || || ||| | | Sbjct 717044 GGCCAATAGGAATCGGTGTTCAGGGTTTGGCTGATGCCTTCATCCTGATGCGTCACCCCT 717103 Query 105279 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCG 105338 |||| | ||| || || |||| | ||| ||||||||||| || |||||| Sbjct 717104 TTGAAAGCCCCGAGGCTCAGCTGCTCAACATCCACATCTTTGAGACCATCTACTACGCCG 717163 Query 105339 CTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 | || ||||| || | ||| |||| | | || || || || || | ||| || | Sbjct 717164 CCCTGGAGGCAAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTATGAAGGCT 717223 Query 105399 CTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTC 105455 |||| | ||| |||||| || || | || ||||||| || || | ||| | Sbjct 717224 CTCCTG--TCAGCAAGGGCACCCTCCAGTACGACATGTGGG-AGAAGACGCCCACTGACC 717280 Query 105456 ACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTC 105514 | ||||| ||||||| || ||||| ||| || | || | | ||||| || Sbjct 717281 TGTGCGACT-GGAAGCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTG 717339 Query 105515 CTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 105574 || |||| || ||||| |||||||||||||| || ||| |||| || || || | || Sbjct 717340 CTGCTGGCCCCGATGCCCACAGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCTATT 717399 Query 105575 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634 || ||||||| | |||||||| | || |||| | ||||||||| ||| ||| Sbjct 717400 GAGGCCTACACAAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTC 717459 Query 105635 AACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 || ||||| | | ||||| | |||| || || ||| | |||| |||||| Sbjct 717460 AATCCTCATCTGCTCAAGGACCTGACGGAGAGAGGACTGTGGAACGAGGAGATGAAG 717516 >seq119 Length=8001379 Score = 89.7 bits (98), Expect = 6e-13 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 104885 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 |||||| | || || || |||| || || || |||||||||||||||||||| ||||| Sbjct 7003473 GTGTGGTATGCCATCATCGAGTCACAGACAGAAACTGGTACACCATACATGCTCTACAAG 7003532 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA---GAGTTCCAAT 105001 |||||||| || ||||| || || |||||||||| ||||| ||| ||| Sbjct 7003533 GACGCCTGCAATAGGAAGAGCAACCAGCAGAATTTGGGCACCATCAAATCCAGT---AAT 7003589 Query 105002 CTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || || ||||| || |||| | ||| |||||| ||| Sbjct 7003590 CTATGCACAGAGATAGTGGAGTACACAAGCAAAGACGAG 7003628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258000348160