Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq136 275 7e-69 seq65 111 2e-19 seq142 102 9e-17 seq119 84.2 2e-11 >seq136 Length=1264375 Score = 275 bits (304), Expect = 7e-69 Identities = 869/1334 (65%), Gaps = 57/1334 (4%) Strand=Plus/Minus Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567 ||||| |||| ||| || ||| |||||||||| | ||||| | ||| | || |||| Sbjct 717449 AACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTTGTGTAGGCCTCAATAGACTCG 717390 Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTC 78627 ||||| |||| |||||||||||| ||||| || ||||| || || | ||| || ||| Sbjct 717389 TTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGGCTGTTC 717330 Query 78628 CGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGCC 78681 | | || ||| | ||||| |||| || | ||| || | ||| | | | Sbjct 717329 CTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCGCACAGGTCAGTGGGC 717270 Query 78682 GCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTC 78741 | || |||||||||| || ||| | |||| | | || || || | ||||| Sbjct 717269 GTCTTCTCCCACATGTCGTACTGGAGGGTGCCCTTGCTGACAGGAGAGCCTTCATACGTC 717210 Query 78742 TCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA---TGACTCGAGCAGGGCCGCGTGGTAC 78798 ||||| | || ||| ||| || ||||| || ||| |||||| |||| ||| Sbjct 717209 TCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTTGCCTC---CAGGGCGGCGTAGTAG 717153 Query 78799 ACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCG 78858 | | ||| |||||| |||||||| | |||| || | | | || || | Sbjct 717152 ATGGTCTCAAAGATGTGGATGTTGAGCAGCTGAGCCTCGG----GGCTTTCAAAGGGGTG 717097 Query 78859 A-GCATCA---TGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCG 78914 | |||||| ||||| |||| |||| ||||| || ||||| | || || |||||||| Sbjct 717096 ACGCATCAGGATGAAGGCATCAGCCAAACCCTGAACACCGATTCCTATTGGCCGGTGGCG 717037 Query 78915 CATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAG 78974 | ||||| | | ||| | | || || |||| || |||| |||||| Sbjct 717036 CTTGTTGGACCTCTCGGCTTCAACCACTGGATAGTAGTTAATGTCTATGATCTTGTTCAG 716977 Query 78975 GTTACGCGTGACGA---CCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCC 79031 ||| | |||||| | ||||| | ||| ||| || ||||| ||| Sbjct 716976 GTT---CTTGACGATTACTTTGGTCACATATGACAGTTTTTTAAAGTCAAAGG----TCC 716924 Query 79032 TTTGATGAAAGTCG-----GTAGGCACAGCGATG----CCAGGTTGCACACGGCCGTCTC 79082 | | | | || || | | ||||||| |||| || ||||| ||| ||| Sbjct 716923 GCTCAGGGGTGACGTACATGTTG--AGAGCGATGGAGGCCAGATTACACACCGCCACCTC 716866 Query 79083 GTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGAT 79142 || |||| | || | ||||||||||| | || | ||||||||||| | Sbjct 716865 ATCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAG 716806 Query 79143 GTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGT 79202 |||| ||||||||||||| ||| |||||||| ||||| ||||||||| || || || Sbjct 716805 ATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGT 716746 Query 79203 CTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTA 79262 || ||| | | || | | | ||| | | | | ||| || || |||| Sbjct 716745 TTCTGTCTGGGATTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACTCGCTTGAC 716686 Query 79263 CCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGG 79322 || |||| | || | ||| | || | || ||||||| || ||| Sbjct 716685 CCTCCCCTCCTTCTCATATTTGGTGTAGAGCTGCTCAAACTCCTCCCCCCAGCATTCGTC 716626 Query 79323 CAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTC 79382 ||| || |||||||||| ||| |||||||| |||||| | || |||| || ||| Sbjct 716625 CAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTT 716566 Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 |||||| | ||| ||||||||||| || || || || | | | ||| || | Sbjct 716565 CATGAACAAGTCAGGGATCCACAGTGCATAAAAAAGATCTCTGGCCCTTTGCTCATCCTT 716506 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 ||| |||| |||||| || ||||| | | ||| |||||| |||||||| || Sbjct 716505 ACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTA 716446 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 |||||||| | ||| | |||| ||||||||||| ||| || || ||||||||||| Sbjct 716445 CATGGCGAAGGCTCCCGGTCTCTTGTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTT 716386 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGT 79622 | |||||| |||||||| || | || | | | |||||| || || ||| || Sbjct 716385 GTAAACTCTCAGCATGGGGACCAGACCATTAGAGTTGCCGTTTGTGCCAGCGAT----GT 716330 Query 79623 ACCGCTCGCCCGAATGTTC-GA-GCAGTGGATT------CCGATGCCCCCGGACCACTTG 79674 | |||| |||| || || || |||| || ||||| || || | | | ||| Sbjct 716329 A--GCTC-CCCGT-TGATCTGATGCAGCTGACCGCCACACCGATTCCTCCAGCCGATTTG 716274 Query 79675 GAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATA 79734 |||||| | || || | ||| ||||| || || ||||| || || ||| |||||||| Sbjct 716273 GAGATGAGGGCACAATGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATG 716214 Query 79735 GCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGC 79794 || | |||||||||||| |||| |||||| |||| || || ||||||||||| || || Sbjct 716213 GCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGTGTAGGA 716154 Query 79795 GTCGCGTGCGTGAA 79808 | ||||| ||||| Sbjct 716153 GAAGCGTGGGTGAA 716140 Score = 242 bits (268), Expect = 4e-59 Identities = 858/1333 (64%), Gaps = 47/1333 (4%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| |||| || ||| || ||||| ||||| | || || || |||||| Sbjct 716110 GAGACCTACAACCTTCTGTCAGAGAGGTGGTTCACCCACGCTTCTCCTACACTCTTCAAC 716169 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || |||| || ||| |||| ||||| ||||| | || ||||||||||||||| Sbjct 716170 GCAGGAACCAACAGGCCACAGCTGTCTAGCTGCTTCCTGCTTGCCATGAAGGATGACAGC 716229 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||||| ||||| || || ||||| ||| | || || | ||||||||| | | | || || Sbjct 716230 ATTGAAGGCATTTATGACACGCTGAAGCATTGTGCCCTCATCTCCAAATCGGCTGGAGGA 716289 Query 19346 ATCGG------GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399 ||||| | || |||| ||| | || | || | ||| ||| || Sbjct 716290 ATCGGTGTGGCGGTCAGCTGC------ATCAGATCAACGGGGAGCTACATCGCTGGCACA 716343 Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 ||||| | | ||| | ||||| ||||| | || | |||||||||||| | || Sbjct 716344 AACGGCAACTCTAATGGTCTGGTCCCCATGCTGAGAGTTTACAACAACACGGCGCGTTAT 716403 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 ||| ||||||| ||| ||| | ||| | |||||||| ||||| |||||||||||| Sbjct 716404 GTCGACCAGGGCGGCAACAAGAGACCGGGAGCCTTCGCCATGTACCTGGAGCCATGGCAC 716463 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAG--ATGCGCT 19577 ||||| | || ||||| || ||| |||| |||| | || ||| | | || Sbjct 716464 TTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGTAAGGATGAGCAAAGGGC- 716522 Query 19578 GTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGG 19637 | || || || || ||||||| || ||| | |||||| ||| || |||| Sbjct 716523 -CAGAGATCTTTTTTATGCACTGTGGATCCCTGACTTGTTCATGAAGAGAGTGGAGAGCA 716581 Query 19638 ACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCG 19697 || |||| ||| |||||||| ||| |||| ||||| || || ||| || || | Sbjct 716582 ACCAAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAATGCTGGGGGG 716641 Query 19698 AGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCC 19757 ||| ||| | || | ||| | || | |||| || ||||| ||||| Sbjct 716642 AGGAGTTTGAGCAGCTCTACACCAAATATGAGAAGGAGGGGAGGGTCAAGCGAGTGGTGA 716701 Query 19758 GGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACA 19817 ||| | | | || ||| | | | | || |||| || || || |||||||||| Sbjct 716702 AGGCTCAGCAGGTGTGGTATGCCATTATTGAATCCCAGACAGAAACGGGTACACCGTACA 716761 Query 19818 TGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGT 19877 || ||||| |||||| ||| ||| || ||| |||| | ||| | ||||| | Sbjct 716762 TGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAT 716821 Query 19878 CGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTA 19937 |||||| || || ||||| | || ||| | || ||| || ||||||| Sbjct 716822 GCAGCAACCTCTGCACAGAAATTGTTGAATACACCAGCCACGATGAGGTGGCGGTGTGTA 716881 Query 19938 ATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCT-------CCTTCGACTTT 19990 ||||||| ||| | || | | ||||| | ||| |||| |||||| Sbjct 716882 ATCTGGCCTCCATCGCTCTCAACATGTACGTCA----CCCCTGAGCGGACCTTTGACTTT 716937 Query 19991 GCCAAATTGTACGAGGTGACCCGGG---TCGTCACGCGTAATCTGAATCGCGTCATCGAT 20047 ||| ||| | |||||| | |||||| | || ||||| |||| || Sbjct 716938 AAAAAACTGTCATATGTGACCAAAGTAATCGTCAAG---AACCTGAACAAGATCATAGAC 716994 Query 20048 CGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATC 20104 |||| || || | || || | | | ||| || | |||||||||||| || Sbjct 716995 ATTAACTACTATCCAGTGGTTGAAGCCGAG---AGGTCCAACAAGCGCCACCGGCCAATA 717051 Query 20105 GCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGAT 20164 | ||||| || ||||| |||| || | ||||| || | | | | | || || Sbjct 717052 GGAATCGGTGTTCAGGGTTTGGCTGATGCCTTCATCCTGATGCGTCACCCCTTTGAAAGC 717111 Query 20165 CCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTG 20224 ||| |||| | |||||||| |||||| ||| || | ||| |||| ||||| | Sbjct 717112 CCCGAGGCTCAGCTGCTCAACATCCACATCTTTGAGACCATCTACTACGCCGCCCTGGAG 717171 Query 20225 GAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCG 20284 | | ||||| || ||| ||| |||||| |||||||||| | || || || | Sbjct 717172 GCAAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTATGAAGGCTCTCCTGTC 717231 Query 20285 TCCGAGGGTATCCTCCAGCCGGACATGTGG-----GGCG-TCACTGA-GAATGAGTTTTG 20337 | |||| | ||||||| ||||||||| | || |||||| || | | | Sbjct 717232 AGCAAGGGCACCCTCCAGTACGACATGTGGGAGAAGACGCCCACTGACCTGTGCGACTGG 717291 Query 20338 GAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCC 20397 ||| || |||| ||||| | ||||| | | ||| |||| | || || Sbjct 717292 AAGC-TGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCC 717350 Query 20398 CATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457 ||||| || ||||| |||||||||||| |||| ||||||||| || | ||| | ||||| Sbjct 717351 GATGCCCACAGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCTATTGAGGCCTACAC 717410 Query 20458 GACCAACATCTAC 20470 | |||||||||| Sbjct 717411 AAGCAACATCTAC 717423 >seq65 Length=22759279 Score = 111 bits (122), Expect = 2e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| ||||||||||||||||| |||||| ||| || |||||||| |||||| | ||| Sbjct 20259640 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTGAAAAAGAGAGGC 20259699 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| ||||||| |||||||||||||| || | | ||||||| Sbjct 20259700 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 20259748 Score = 111 bits (122), Expect = 2e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| ||||||||||||||||| |||||| ||| || |||||||| |||||| | ||| Sbjct 20277692 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTGAAAAAGAGAGGC 20277633 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| ||||||| |||||||||||||| || | | ||||||| Sbjct 20277632 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 20277584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 20261746 ATCTACCGGGTGGAGAACCCCTTCGACTTTATGGAGAACATCTCCCTGGAGGGAAAGACC 20261805 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 20261806 AACTTCTTTGAGAAGCGAGTGGGCGAGTA 20261834 >seq142 Length=12874233 Score = 102 bits (112), Expect = 9e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||||||| |||||||||||||||||||||||||| ||| ||| || | |||||| Sbjct 6159183 GCTTTTGCAGCTGTGGAAGGAATCTTCTTCTCTGGCTCATTCGCTGCCATCTATTGGCTC 6159124 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | ||||| ||||| || || | | |||||| |||||||| | |||| ||| Sbjct 6159123 AAGAAGAGAGGCCTGATGCCCGGGCTTACCTACTCCAATGAGCTGATAAGCAGGGATGAG 6159064 Query 60111 G 60111 | Sbjct 6159063 G 6159063 >seq119 Length=8001379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||| | |||| || ||||||||||| | |||| ||||||||||||| Sbjct 7003603 ATCTCTGTGCATAGATTACTGGATTTGATGGTGCCCAAATTCTGCTGGTTGCTCTTCCTA 7003544 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||| || || || || || Sbjct 7003543 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCAGTTTC 7003503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522167080960