Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq136 194 2e-44 seq62 100 3e-16 >seq136 Length=1264375 Score = 194 bits (214), Expect = 2e-44 Identities = 464/696 (67%), Gaps = 12/696 (2%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || ||||| | || || || |||||||| || || || || ||| |||| ||| Sbjct 716140 TTCACCCACGCTTCTCCTACACTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCTAGC 716199 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||||||| | || |||||||||||| || || ||||| || || ||||| ||| | Sbjct 716200 TGCTTCCTGCTTGCCATGAAGGATGACAGCATTGAAGGCATTTATGACACGCTGAAGCAT 716259 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA---CTGCTCGAACGTCCGT 53449 ||||||| ||||||||| | | | || || |||||| | | ||| | || | Sbjct 716260 TGTGCCCTCATCTCCAAATCGGCTGGAGGAATCGGTGTGGCGGTCAGCTGCA---TCAGA 716316 Query 53450 GCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCT 53508 | ||||| | | ||| || || |||||| | | |||| | || || ||||| Sbjct 716317 TC-AACGGGGAGCTACATCGCTGGCACAAACGGCAACTCTAATGGTCTGGTCCCCATGCT 716375 Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTC 53568 | || | |||||||||||| || || ||| ||||||| || ||| | ||| | Sbjct 716376 GAGAGTTTACAACAACACGGCGCGTTATGTCGACCAGGGCGGCAACAAGAGACCGGGAGC 716435 Query 53569 GTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT 53628 |||||||| ||||| ||||| |||||| ||| | | || || || |||||| Sbjct 716436 CTTCGCCATGTACCTGGAGCCATGGCACTTTGACGTGTTTGACTTCCTGGAGCTGAAGAA 716495 Query 53629 GAATCAGGGTGACGAAGAG--ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCG 53686 ||| |||| | || ||| | | || | | || || ||| || |||||||| || Sbjct 716496 GAACACGGGTAAGGATGAGCAAAGGGC--CAGAGATCTTTTTTATGCACTGTGGATCCCT 716553 Query 53687 GACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAG 53746 ||| | |||||| | | ||||||| || | || |||| |||||||| ||||||||| Sbjct 716554 GACTTGTTCATGAAGAGAGTGGAGAGCAACCAAGACTGGTCTCTGATGTGTCCGAACGAG 716613 Query 53747 TGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCA 53806 |||||||| || | | || || ||||||||| | || | || | || | Sbjct 716614 TGCCCCGGGCTGGACGAATGCTGGGGGGAGGAGTTTGAGCAGCTCTACACCAAATATGAG 716673 Query 53807 GTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAG 53866 |||| | |||| ||| ||||| | |||| ||| |||| || | | Sbjct 716674 AAGGAGGGGAGGGTCAAGCGAGTGGTGAAGGCTCAGCAGGTGTGGTATGCCATTATTGAA 716733 Query 53867 AGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGC 53926 |||| || ||||| || ||||||||| ||||| || | |||| ||||||| Sbjct 716734 TCCCAGACAGAAACGGGTACACCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGC 716793 Query 53927 AACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||| |||| | ||| |||||||| |||||| Sbjct 716794 AACCAGCAGAATCTGGGCACCATCAAATGCAGCAAC 716829 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| || || || || || |||||| |||||||||||||| | Sbjct 717336 CCTGCTGCTGGCCCCGATGCCCACAGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 717395 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 | ||| | ||||| | |||||||||| ||| || ||| | || |||||| || Sbjct 717396 TATTGAGGCCTACACAAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGAT 717455 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 |||| || || ||||||||||| Sbjct 717456 CGTCAATCCTCATCTGCTCAAGGACCTG 717483 >seq62 Length=2233268 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| |||||||| ||||| || | || ||||| || ||| Sbjct 988004 GTGAAAATATAACGAGGGCTGGCAGCATCTTTGCCTCCGTTGATGCGAGTACCAAACTGT 988063 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| |||| || || ||||| ||||||| |||||||||||| || |||||||| || Sbjct 988064 CCAAGAGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACT 988123 Query 117425 ATCGT 117429 || || Sbjct 988124 ATGGT 988128 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | |||||| ||||| ||||| || | || || ||||||||| Sbjct 988004 GTGAAAATATAACGAGGGCTGGCAGCATCTTTGCCTCCGTTGATGCGAGTACCAAACTGT 988063 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| |||| ||| | ||||||| |||||| || ||||| ||||| ||||| Sbjct 988064 CCAAGAGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACT 988123 Query 152149 ATCGT 152153 || || Sbjct 988124 ATGGT 988128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213373363200