Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq152 141 8e-29 seq6 100 2e-16 >seq152 Length=5132711 Score = 141 bits (156), Expect = 8e-29 Identities = 137/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| ||||| ||||| || || |||||||||||||| || ||||| ||||||||||| Sbjct 3436872 CATGTTTGTGTATTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTC 3436931 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || |||| ||| || ||||||| || | | ||| |||||||| || Sbjct 3436932 GCCCTCCTCTCTGTCTGTGAACCCGAGATTGTCCAGGAACTGCCGGGACCCGTTGGCCTC 3436991 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30396 ||||||||| ||||| ||||| |||||||| |||| ||||| || |||| |||| Sbjct 3436992 CCAGATCTTCACCCCTTTCTCCGAGAGCTCCTTGGCATTTGTCGATCCCTGTGAC 3437046 Score = 125 bits (138), Expect = 6e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || || || | |||||||||||| || || || Sbjct 3436287 AGTCCTGTGATGTGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAAAGGC 3436346 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || || || | |||||| ||||||||||| ||||| || || | | Sbjct 3436347 ACTCCCAGACCCATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCACAC 3436406 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||| ||||| || | ||||||||| || || |||||||| || || |||| Sbjct 3436407 ACGCTGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATTTGGGGCAGGTCT 3436460 >seq6 Length=17310014 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||| ||||||||||| | ||| ||||||| ||| |||||| ||||| || |||||||| Sbjct 13840831 CTCTCTGCTGAGGACGATGTTGATCCTGTTGTTCAAAGGTCTGTTCTTCTCTGGGATGGA 13840772 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| ||||| || ||||| |||||||| |||||| | ||| Sbjct 13840771 AAACCACGTCTTCCTGCCCATGATCACCACATTCTGCCTTCCT 13840729 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||| ||||||||||| | ||| ||||||| ||| |||||| ||||| || |||||||| Sbjct 14041129 CTCTCTGCTGAGGACGATGTTGATCCTGTTGTTCAAAGGTCTGTTCTTCTCTGGGATGGA 14041070 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| ||||| || ||||| |||||||| |||||| | ||| Sbjct 14041069 AAACCACGTCTTCCTGCCCATGATCACCACATTCTGCCTTCCT 14041027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 |||||||||||||| ||||| | || |||| | | ||||| || ||||| || ||| Sbjct 13842178 ACTCTGGCAGTAGATGATATTTTCCTGGACTGATTTGAGGGAGGAACGTGTCACAGTCAA 13842119 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCCC 110278 | ||| || | | ||||||||||| ||||| |||||||||||||||| |||||| Sbjct 13842118 ACTGCTTCAGGATTCGCGTGACAAACAGTCTCTTGGTCCCCGGGCTCTCCATCAGCTCCT 13842059 Query 110279 CGTAG 110283 |||| Sbjct 13842058 GGTAG 13842054 Score = 91.5 bits (100), Expect = 1e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 110567 CAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGA 110626 |||||||||||||||| | ||| | || |||||||||| ||| |||||| | ||||||| Sbjct 14039547 CAGGATGCCACGGCAGGTTTCCATGGTATCCGATGCCCAGGTCCGGACACACCGCCACGA 14039488 Query 110627 TACCGTTCAGAATGAGGGGCATGGT 110651 ||||||| |||||| ||| ||| || Sbjct 14039487 TACCGTTAAGAATGCGGGACATTGT 14039463 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 |||||||||||||| ||||| | || |||| | | ||||| || ||||| || ||| Sbjct 14042496 ACTCTGGCAGTAGATGATATTTTCCTGGACTGATTTGAGGGAGGAACGTGTCACAGTCAA 14042437 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCCC 110278 | ||| || | | ||||||||||| ||||| |||||||||||||||| |||||| Sbjct 14042436 ACTGCTTCAGGATTCGCGTGACAAACAGTCTCTTGGTCCCCGGGCTCTCCATCAGCTCCT 14042377 Query 110279 CGTAG 110283 |||| Sbjct 14042376 GGTAG 14042372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308498467328