Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq166 111 1e-19 seq81 98.7 7e-16 >seq166 Length=972737 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || || || ||| Sbjct 969225 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 969284 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| | ||||||||||| | || ||||| || Sbjct 969285 GACACCATTGAGAATGTCAAGGCCAAAA-TCCAGGACAAAGAAGGCATCCCTCCAGACCA 969343 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || ||||| | ||||| | ||| ||||| Sbjct 969344 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 969403 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 969404 CATCCAGAAGGAGTCCAC 969421 >seq81 Length=8687835 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || ||||| ||| Sbjct 2926420 ATGCAGATATTTGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAACCCAGC 2926479 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || |||||||| Sbjct 2926480 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 2926539 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | ||||| | || |||||| Sbjct 2926540 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 2926599 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 2926600 ATCCAGAAGGAGTCCAC 2926616 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || ||||| || || ||||| ||| Sbjct 2926876 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCCCAGC 2926935 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || |||||||| Sbjct 2926936 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 2926995 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | ||||| | || |||||| Sbjct 2926996 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 2927055 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 2927056 ATCCAGAAGGAGTCCAC 2927072 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| ||| Sbjct 2927332 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAACCCAGC 2927391 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || ||||| || Sbjct 2927392 GACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 2927450 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || |||||||| | ||||| | || ||||| Sbjct 2927451 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 2927510 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 2927511 CATCCAGAAAGAATCTAC 2927528 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || |||||||| || || || ||||| | || ||||| || Sbjct 2925733 AACATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGCCC 2925792 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| | || |||||| | || || ||||| | || ||||| Sbjct 2925793 AGCGATACCATTGAGAATGTCAAGGCAAAAA-TCCAGGATAAGGAAGGCATTCCCCCAGA 2925851 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || ||||||||||| || |||||||| | ||||| | || || Sbjct 2925852 TCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTA 2925911 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||| || || Sbjct 2925912 CAACATCCAGAAAGAATCTAC 2925932 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| | | Sbjct 2926192 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGT 2926251 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || ||||| || Sbjct 2926252 GACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 2926310 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || |||||||| | ||||| | || ||||| Sbjct 2926311 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGACTACAA 2926370 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 2926371 CATCCAGAAAGAATCTAC 2926388 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| | | Sbjct 2939041 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 2939100 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || ||||| || Sbjct 2939101 GACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 2939159 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || |||||||| | ||||| | || ||||| Sbjct 2939160 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAA 2939219 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 2939220 CATCCAGAAAGAATCTAC 2939237 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || ||||| || || ||||| ||| Sbjct 2939269 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAACCCAGC 2939328 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || ||||| || Sbjct 2939329 GACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 2939387 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || |||||||| | ||||| | || ||||| Sbjct 2939388 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 2939447 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 2939448 CATCCAGAAAGAATCTAC 2939465 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || ||||| ||| Sbjct 2926648 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCCCAGC 2926707 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || ||||| || Sbjct 2926708 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2926767 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | ||||| | || |||||| Sbjct 2926768 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGACTACAAC 2926827 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 2926828 ATCCAGAAAGAATCTAC 2926844 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || ||||| ||| Sbjct 2927104 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGC 2927163 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || ||||| || Sbjct 2927164 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2927223 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | ||||| | || ||||| Sbjct 2927224 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAT 2927283 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 2927284 ATCCAGAAAGAATCTAC 2927300 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || || ||||| || || ||||| ||| Sbjct 2939497 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCCCAGC 2939556 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || ||||| || Sbjct 2939557 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2939616 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | ||||| | || ||||| Sbjct 2939617 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAT 2939676 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 2939677 ATCCAGAAAGAATCTAC 2939693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008018115072