Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq152 123 2e-23 seq6 96.9 3e-15 >seq152 Length=5132711 Score = 123 bits (136), Expect = 2e-23 Identities = 120/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || ||||| ||||||||||| ||||| || |||| ||| Sbjct 3436894 AAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTCGCCCTCCTCTCTGTCTGTGAAC 3436953 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||| || | | ||| |||||||| ||||||||||| ||||| ||||| Sbjct 3436954 CCGAGATTGTCCAGGAACTGCCGGGACCCGTTGGCCTCCCAGATCTTCACCCCTTTCTCC 3437013 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30168 |||||||| |||| ||||| || |||| |||| Sbjct 3437014 GAGAGCTCCTTGGCATTTGTCGATCCCTGTGAC 3437046 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || || || | |||||||||||| || || ||| Sbjct 3436287 AGTCCTGTGATGTGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAAAGGC 3436346 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || ||||| | |||||| ||||| ||||| ||||| || || | | Sbjct 3436347 ACTCCCAGACCCATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCACAC 3436406 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||| ||||| || | ||| ||||| || || || ||||| Sbjct 3436407 ACGCTGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCAT 3436447 >seq6 Length=17310014 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||| ||||||||||| | ||| | ||||| ||| |||||| ||||| || |||||||| Sbjct 13840831 CTCTCTGCTGAGGACGATGTTGATCCTGTTGTTCAAAGGTCTGTTCTTCTCTGGGATGGA 13840772 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| ||||| || ||||| |||||||| |||||| | ||| Sbjct 13840771 AAACCACGTCTTCCTGCCCATGATCACCACATTCTGCCTTCCT 13840729 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||| ||||||||||| | ||| | ||||| ||| |||||| ||||| || |||||||| Sbjct 14041129 CTCTCTGCTGAGGACGATGTTGATCCTGTTGTTCAAAGGTCTGTTCTTCTCTGGGATGGA 14041070 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| ||||| || ||||| |||||||| |||||| | ||| Sbjct 14041069 AAACCACGTCTTCCTGCCCATGATCACCACATTCTGCCTTCCT 14041027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101 |||||||||||||| ||||| | || |||| | | ||||| || |||| || ||| Sbjct 13842178 ACTCTGGCAGTAGATGATATTTTCCTGGACTGATTTGAGGGAGGAACGTGTCACAGTCAA 13842119 Query 114102 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCCC 114161 | ||| || | | ||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 13842118 ACTGCTTCAGGATTCGCGTGACAAACAGTCTCTTGGTCCCCGGGCTCTCCATCAGCTCCT 13842059 Query 114162 CGTAG 114166 |||| Sbjct 13842058 GGTAG 13842054 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101 |||||||||||||| ||||| | || |||| | | ||||| || |||| || ||| Sbjct 14042496 ACTCTGGCAGTAGATGATATTTTCCTGGACTGATTTGAGGGAGGAACGTGTCACAGTCAA 14042437 Query 114102 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCCC 114161 | ||| || | | ||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 14042436 ACTGCTTCAGGATTCGCGTGACAAACAGTCTCTTGGTCCCCGGGCTCTCCATCAGCTCCT 14042377 Query 114162 CGTAG 114166 |||| Sbjct 14042376 GGTAG 14042372 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 |||| || |||||||||||||| | ||| | || |||||||||| ||| |||||| | Sbjct 14039554 AGTCGAACAGGATGCCACGGCAGGTTTCCATGGTATCCGATGCCCAGGTCCGGACACACC 14039495 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCATGGT 114534 |||||||||||||| |||||| ||| ||| || Sbjct 14039494 GCCACGATACCGTTAAGAATGCGGGACATTGT 14039463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161299156224