Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq142 197 1e-45 seq152 136 3e-27 >seq142 Length=12874233 Score = 197 bits (218), Expect = 1e-45 Identities = 223/299 (75%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 69019 CCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGA 69078 ||| ||| | |||||| | | |||||||| || | ||| || || | | ||||| Sbjct 12722386 CCACACTCATAATAGGAGACCTGGAGGACACCATCTACAGAGAGAGACCAGATGAGGTGA 12722445 Query 69079 ACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGA 69138 |||| |||||||| || || | |||| | ||||||||||||| || ||| ||| Sbjct 12722446 ACGGGTGGGGAAAATTCTACCTTCCCAAGACATTGACGATGCAGGTTATAGGTGTAGTGG 12722505 Query 69139 CGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGT 69198 ||| || | | | |||||||||||||| |||||||||||||||||| | ||| ||| Sbjct 12722506 AGGGCACCTCGTGTCCGTGTGACCAGCTTGTTCTGATGACCTGCGAGGACAAAAAGCTGT 12722565 Query 69199 ACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAG 69258 ||| ||| || ||||| ||||||||| |||||||| | ||| | ||| || || | Sbjct 12722566 ACGCCTACGATGGAGAGGAGCTGCATCTGGTGGCTCCAAGCCTGCAGCAGCTGTGGACGG 12722625 Query 69259 AAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 | ||||||| ||||| |||| | ||||||| || || ||||||||||||||||||||| Sbjct 12722626 AGGGAATAGAGTATCCAGCATCCAAGAGCTACTACCACGGGGAGGCCTTCAAACATATG 12722684 Score = 152 bits (168), Expect = 4e-32 Identities = 181/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133 ||||||||| |||||||| || || | |||| || | |||| ||| || ||| Sbjct 12734065 GGTGAACGGGTGGGGAAAATTCTACCTTCCCAAGATGGTAAACATGCTGGTTATAGGTGT 12734124 Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193 ||| ||| || ||| | |||||||||||||| |||||||||||||||||| | || Sbjct 12734125 AGTGGAGGGCACCTCATGCACGTGTGACCAGCTTGTTCTGATGACCTGCGAGGACAAAAA 12734184 Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGG 69253 | |||||| ||| || ||||| ||||||||| |||||||| ||||||||| | Sbjct 12734185 GCTGTACGCCTACGATGGAGAGGAGCTGCATCTGGTGGCTTCACACCTGGATCAG-TTAT 12734243 Query 69254 GGAAGAAGG-AATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAAC 69312 | || |||| ||||| ||||| |||| | ||||||| || | |||||||||||| || Sbjct 12734244 GTAACAAGGAAATAGAGTATCCAGCATCCAAGAGCTACTACAACGGGGAGGCCTTCGAAG 12734303 Query 69313 ATA 69315 ||| Sbjct 12734304 ATA 12734306 Score = 102 bits (112), Expect = 6e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 ||| ||||||||||||| | | |||| || |||||| ||| | |||||||| ||||| Sbjct 12722797 GACAAAGGAGGACTGGGCAGACGCGAGGAAGGGCCCTGTGGGGAGGAGGTTGGACGAGGA 12722856 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436 |||||||||||| ||| ||| |||| ||| || | ||| |||||||||||| ||| Sbjct 12722857 GCATCATAAACTTGTGACGTCAAAAAAGTCTTCATTCATGAACAATCTCAGAATCGCCAG 12722916 Query 69437 ACAA 69440 |||| Sbjct 12722917 ACAA 12722920 >seq152 Length=5132711 Score = 136 bits (150), Expect = 3e-27 Identities = 136/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| ||||| ||||| || || |||||||| ||||| || ||||| ||||||||||| Sbjct 3436872 CATGTTTGTGTATTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTC 3436931 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| || |||| ||| || ||||||| || | | ||| |||||||| || Sbjct 3436932 GCCCTCCTCTCTGTCTGTGAACCCGAGATTGTCCAGGAACTGCCGGGACCCGTTGGCCTC 3436991 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 27662 ||||||||| ||||| ||||| |||||||| |||| ||||| || |||| |||| Sbjct 3436992 CCAGATCTTCACCCCTTTCTCCGAGAGCTCCTTGGCATTTGTCGATCCCTGTGAC 3437046 Score = 125 bits (138), Expect = 5e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || || || | |||||||||||| || || || Sbjct 3436287 AGTCCTGTGATGTGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAAAGGC 3436346 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || || | |||||| ||||||||||| ||||| ||||| | Sbjct 3436347 ACTCCCAGACCCATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCACAC 3436406 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||| ||||| || | ||||||||| || || |||||||| || || |||| Sbjct 3436407 ACGCTGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATTTGGGGCAGGTCT 3436460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505470706304