Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq199 158 2e-33 seq201 150 3e-31 >seq199 Length=11596915 Score = 158 bits (174), Expect = 2e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 |||| ||| | || || ||| || |||||||||||||||||||||||| |||||||| Sbjct 7992677 TTGATGATGTCAAAGCCTGCGTTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAG 7992736 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| |||| | ||| ||||||||||| || || |||| ||| | ||| || Sbjct 7992737 CAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGAAAGGGGCTCCCATCTCCACCATGGTC 7992796 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || |||||||| || | | ||| |||||||||| | || | ||| ||||||||| Sbjct 7992797 TCCCCAAAGATGGCATTAGCCCTGGGTTTTTCCACCAGCAGGCCTGGGTAGAGCTCCACA 7992856 Query 8531 GCCTCGACGTCTCCGTA 8547 || ||||| | |||||| Sbjct 7992857 GCGTCGACATGTCCGTA 7992873 Score = 136 bits (150), Expect = 6e-27 Identities = 183/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || || | |||||| || ||||||||||| ||| |||||| ||| || || ||| | Sbjct 7994513 CCAATCAGGATGAGCCGTGTGGTCTGGAAGAGTCTTTCGTCATCCCAGTCGGGGTGTACC 7994572 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | |||| ||||| ||||||| ||||||||||| ||||| || |||||||||||||| Sbjct 7994573 TCCTTCAACACATCACACACCCGGTTGTGTTCCCGCAGCCAAATGGTGGCGTACATCATC 7994632 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || ||||| |||||||| || ||||| || || ||||| | || ||||| || Sbjct 7994633 AGACCAGGGACCAGGCCGAATGCCTCGTGGCCCACAGCGAAGCGGTGAGAGTCGGGGACA 7994692 Query 9415 TCGGGAGGATAGATCATGT--GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCAC 9472 | || || ||| ||||| ||||| || || || || | ||||| ||||| || | Sbjct 7994693 TGAGGGGGGTAGTGCATGTCGACACCT--ACTTCCTTTACTGTTGGGGGGTACATCTCTC 7994750 Query 9473 CGTCAATCATCTG 9485 | || | ||||| Sbjct 7994751 CATCCAGGATCTG 7994763 >seq201 Length=2273880 Score = 150 bits (166), Expect = 3e-31 Identities = 203/282 (72%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 8272 CTCCTCATCG---GGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 |||||||| | ||||| |||| | | ||||||||| |||| |||| ||| || Sbjct 1863859 CTCCTCATTGCGTGGAACATGGAAGTCCACGTACGGACACCACTTGGTGTTGAGACACAC 1863800 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 || || | ||| | | |||||||| ||| || ||||| ||||||||||| Sbjct 1863799 CAGTTTCTTCAAAGTGGAAGTTTTGACGATATTGAAGCCTGTCTCTCCCCCGAAGGTGCT 1863740 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 ||||||||| ||| | |||||||||||| ||| ||| |||||||| |||||||| || Sbjct 1863739 GGGCTTCCAATACTCAGGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGG 1863680 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 ||| |||| ||| | || |||||||| || || | || ||||| | || |||| || Sbjct 1863679 AGCACCCATCTCAACCATACTCTCACCAAATATACCATTCGGACGTGCTTTCTCCAGCAT 1863620 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || ||| | ||| | ||||| ||| || | ||| ||||| || Sbjct 1863619 GACTCCAGGGTAAAACTCCAAAGCATCAATGTCCCCGTAGAG 1863578 Score = 104 bits (114), Expect = 3e-17 Identities = 173/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || ||||||||||| | ||||||||||| || ||||| ||| ||| |||||| Sbjct 1860263 TCACCAATAATGATGAGCCTGGTGGTCTGGAAAAGCTGCTCATCATCCCAGGTGGGATGT 1860204 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || || ||||| || || |||||||| ||||| ||||| | ||||||||||| Sbjct 1860203 TCAGCCTTAAGGACATCACAGACTCTGTTGTGCTCCCTCAGCCATACGGTGGCGTACATG 1860144 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG-GG 9410 |||| || || | | |||||| ||| ||||| ||||||| ||| | | | || Sbjct 1860143 GTGAGACCCGGCAGGATGCCAAATAACTCCTGACCAGTGACCAGACG-ATGCTGTGGAGG 1860085 Query 9411 CA---CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467 | |||| ||| || | ||||||||| || | || || | ||||| ||||| Sbjct 1860084 GAAACCTTC---AGGGTACACCATGTGCACAGGGGCCTCAGATACTGTAGGGGGGTACAT 1860028 Query 9468 TTCACC 9473 ||||| Sbjct 1860027 CTCACC 1860022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716873358991360