Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Seriola_20quinqueradiata_20[genbank_20GCA_5F002217815.1_202017-07- 05] 384 sequences; 639,269,536 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq166 147 2e-30 seq81 136 4e-27 >seq166 Length=972737 Score = 147 bits (162), Expect = 2e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 969442 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 969383 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||||||||| || || ||||| ||||| | || | || || Sbjct 969382 CCATCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCT 969323 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| |||||| ||| | | | |||||||| | ||| ||||||| || Sbjct 969322 TTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTG 969263 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || ||||| ||||| ||||||||| Sbjct 969262 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 969224 Score = 138 bits (152), Expect = 1e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 969670 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 969611 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| || || || || ||||| ||||| | ||| | || ||| Sbjct 969610 CCGTCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCC 969551 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| || | || |||| || | | |||||||| | || ||||||| || Sbjct 969550 TTATCC-TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCGACCTCCAGAGT 969492 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || ||||| ||||| ||||||||| Sbjct 969491 GATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 969452 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| ||||||||| ||||| ||||| ||||||||||| Sbjct 969214 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 969155 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||||| || | || ||| Sbjct 969154 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCC 969095 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| |||||| ||| | | ||||| || | ||| ||||||| || Sbjct 969094 TTATCCTGGATTTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTG 969035 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| || || ||||| || || |||||||| || Sbjct 969034 ATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATCTT 968994 >seq81 Length=8687835 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| ||||| ||||| || |||||||| Sbjct 2927093 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGA 2927034 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| || || | ||||| || ||| Sbjct 2927033 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 2926974 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||||| | ||| ||||||| || Sbjct 2926973 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTG 2926914 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || || ||||| ||||| || ||||| Sbjct 2926913 ATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 2926876 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | || ||||| || || || ||||| ||||| ||||| ||| Sbjct 2926874 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAG 2926815 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || ||||| | ||| ||||| | |||| Sbjct 2926814 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2926755 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | |||||||| | ||| ||| Sbjct 2926754 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACC 2926695 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || ||||| || || ||||| || || |||||||| Sbjct 2926694 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 2926648 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | || ||||| || || || ||||| ||||| ||||| ||| Sbjct 2926418 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAG 2926359 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || ||||| | ||| ||||| | |||| Sbjct 2926358 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2926299 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||| | | | ||||| || | ||| ||| Sbjct 2926298 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACC 2926239 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || ||||| || || ||||| ||||| ||||||||| Sbjct 2926238 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCATG 2926191 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| ||||| ||||| || |||||||| Sbjct 2926637 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGA 2926578 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| || || | ||||| || ||| Sbjct 2926577 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 2926518 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||||| | || ||||| | || Sbjct 2926517 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCAAGGGTG 2926458 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || || ||||| || || |||||||| Sbjct 2926457 ATGGTCTTACCAGTGAGGGTCTTGACAAATATCTGCAT 2926420 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | || ||||| || || || ||||| ||||| ||||| || Sbjct 2927558 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 2927499 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || ||||| | ||| ||||| | |||| Sbjct 2927498 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2927439 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||| | | | |||||||| | || ||| Sbjct 2927438 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGTTCAACC 2927379 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || ||||| || || ||||| ||||| ||||||||| Sbjct 2927378 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCATG 2927331 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| || || ||||| ||||||||||| Sbjct 2927321 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAGTCAGAGAGGGTGCGG 2927262 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||||| || ||| Sbjct 2927261 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 2927202 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||||| | ||| ||||| | || Sbjct 2927201 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTG 2927142 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || || ||||| || || |||||||| Sbjct 2927141 ATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 2927104 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| || || ||||| || |||||||| Sbjct 2939714 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAGTCAGACAGGGTGCGA 2939655 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||||| || ||| Sbjct 2939654 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 2939595 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||||| | ||| ||||||| || Sbjct 2939594 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTG 2939535 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || || ||||| ||||| || ||||| Sbjct 2939534 ATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 2939497 Score = 122 bits (134), Expect = 8e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| ||||| ||||| ||||||||||| Sbjct 2939258 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGA 2939199 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | ||||| || ||| Sbjct 2939198 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 2939139 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||| ||||| | || Sbjct 2939138 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTG 2939079 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGT 41864 || || || || || || ||||| ||||| |||||||||| Sbjct 2939078 ATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGT 2939039 Score = 120 bits (132), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| ||||| ||||| || |||||||| Sbjct 2925953 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGA 2925894 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| || || | ||||| || ||| Sbjct 2925893 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 2925834 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||||||| ||| | | | || ||||| | ||| ||||||| || Sbjct 2925833 TTATCCTGGATTTTTGCCTTGACATTCTCAATGGTATCGCTGGGCTCAACCTCCAAGGTG 2925774 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 || || || || || || ||||| || || ||||||||||| || Sbjct 2925773 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTTGTC 2925730 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | || ||||| || || || ||||| ||||| ||||| || Sbjct 2939495 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 2939436 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||||||||| || ||||| | ||| ||||| | |||| Sbjct 2939435 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2939376 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||| | | | |||||||| | || ||| Sbjct 2939375 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGTTCAACC 2939316 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || ||||| || || ||||| ||||| || ||||| Sbjct 2939315 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 2939269 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| ||||| ||||| ||||||||||| Sbjct 2926181 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAGAGGGTGCGG 2926122 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 2926121 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 2926062 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||| ||||||| || Sbjct 2926061 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTG 2926002 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| ||||| |||||||| Sbjct 2926001 ATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 2925964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301780940800