Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq85036 118 1e-21
seq19301 118 1e-21
seq3398 118 1e-21
seq16819 102 1e-16
seq11759 102 1e-16
seq11199 96.9 4e-15
>seq85036
Length=2202
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | |||
Sbjct 1123 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 1064
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|||||||| || || || ||||||||||| || ||||| | | ||| ||| |||||||
Sbjct 1063 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 1004
Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGG 54174
|| |||| ||| |||| | | |||| ||
Sbjct 1003 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 974
>seq19301
Length=1192634
Score = 118 bits (130), Expect = 1e-21
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | |||
Sbjct 386050 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCT 386109
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|||||||| || || |||||||||||||| || ||||| | | ||| ||| |||||||
Sbjct 386110 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 386169
Query 54145 CGGTTCCAAGTATAT 54159
|| |||| ||| ||
Sbjct 386170 GGGCTCCAGGTACAT 386184
Score = 102 bits (112), Expect = 1e-16
Identities = 126/170 (74%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934
|||| || || || ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 380616 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 380675
Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994
| | || || || || || ||||||||||| |||||||||||||| |||| ||| ||||
Sbjct 380676 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 380735
Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 53043
|||| | || ||||| | || ||||| | ||| ||| | || |||||
Sbjct 380736 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 380784
>seq3398
Length=854497
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | |||
Sbjct 22329 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 22270
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|||||||| || || || ||||||||||| || ||||| | | ||| ||| |||||||
Sbjct 22269 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 22210
Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGG 54174
|| |||| ||| |||| | | |||| ||
Sbjct 22209 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 22180
Score = 107 bits (118), Expect = 2e-18
Identities = 125/169 (74%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934
|||| || || || ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 30534 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 30475
Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994
| | || || || || || ||||||||||| |||||||||||||| |||| ||| ||||
Sbjct 30474 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 30415
Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043
|||| | || ||||| | ||| ||||| | | ||| | || |||||
Sbjct 30414 TTTGCGAGATCTCCCACACAGTCTTATACAGTTCCTTCAGGTCATCTGG 30366
>seq16819
Length=1945512
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| |
Sbjct 739164 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 739105
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| || || || ||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 739104 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 739045
Query 24277 C 24277
|
Sbjct 739044 C 739044
Score = 84.2 bits (92), Expect = 3e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 24645 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 24704
||||| || || ||||||||||| || ||||| | |||||||||||| || |||||||||
Sbjct 738107 GTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTGGA 738048
Query 24705 AAAATAACAAA 24715
||||| |||||
Sbjct 738047 AAAATTACAAA 738037
Score = 82.4 bits (90), Expect = 9e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||| | ||| || |||||||| ||||| |||||||| || ||||||||||| || ||
Sbjct 738601 ATCTTTGATATAGGTGTCAATCAACAGACTGTACATTTCAGAGTGAATGTTTTCCATTGC 738542
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487
|| || || |||||||| || | || |||||
Sbjct 738541 AATCTGGAAACCGTAGAAGCAACGGGCTTCGGT 738509
>seq11759
Length=1730004
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || |
Sbjct 147487 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCT 147546
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| | ||| | |||| |||||||||||||| ||||| || ||||||||||| ||||| |
Sbjct 147547 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATG 147606
Query 24277 C 24277
|
Sbjct 147607 C 147607
Score = 100 bits (110), Expect = 3e-16
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 24686
|||| ||| || || |||||||| ||||| |||| || | ||| ||||| |||||||||
Sbjct 149176 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 149235
Query 24687 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729
||| |||| ||||| |||||||| ||||||| ||||| ||||
Sbjct 149236 TCAGGATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTT 149278
>seq11199
Length=1679328
Score = 96.9 bits (106), Expect = 4e-15
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 24686
|||| ||| || || |||||||| ||||| |||| || | ||| ||||| |||||||||
Sbjct 641027 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 640968
Query 24687 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729
||| |||| ||||| || ||||| ||||||| ||||| ||||
Sbjct 640967 TCAGGATACTGAATAGGGAAAATGACAAATCGTTTTGGGTTTT 640925
Score = 96.9 bits (106), Expect = 4e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || |
Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| |
Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 643635
Query 24277 C 24277
|
Sbjct 643634 C 643634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593085709323360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |