Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq85036 118 1e-21 seq19301 118 1e-21 seq3398 118 1e-21 seq16819 102 1e-16 seq11759 102 1e-16 seq11199 96.9 4e-15 >seq85036 Length=2202 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| Sbjct 1123 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 1064 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 |||||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 1063 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 1004 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGG 54174 || |||| ||| |||| | | |||| || Sbjct 1003 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 974 >seq19301 Length=1192634 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| Sbjct 386050 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCT 386109 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 |||||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 386110 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 386169 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 386170 GGGCTCCAGGTACAT 386184 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 380616 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 380675 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 380676 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 380735 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 53043 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 380736 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 380784 >seq3398 Length=854497 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| Sbjct 22329 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 22270 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 |||||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 22269 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 22210 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGG 54174 || |||| ||| |||| | | |||| || Sbjct 22209 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 22180 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 30534 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 30475 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 30474 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 30415 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 |||| | || ||||| | ||| ||||| | | ||| | || ||||| Sbjct 30414 TTTGCGAGATCTCCCACACAGTCTTATACAGTTCCTTCAGGTCATCTGG 30366 >seq16819 Length=1945512 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| | Sbjct 739164 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 739105 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 739104 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 739045 Query 24277 C 24277 | Sbjct 739044 C 739044 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 24645 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 24704 ||||| || || ||||||||||| || ||||| | |||||||||||| || ||||||||| Sbjct 738107 GTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTGGA 738048 Query 24705 AAAATAACAAA 24715 ||||| ||||| Sbjct 738047 AAAATTACAAA 738037 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | ||| || |||||||| ||||| |||||||| || ||||||||||| || || Sbjct 738601 ATCTTTGATATAGGTGTCAATCAACAGACTGTACATTTCAGAGTGAATGTTTTCCATTGC 738542 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 || || || |||||||| || | || ||||| Sbjct 738541 AATCTGGAAACCGTAGAAGCAACGGGCTTCGGT 738509 >seq11759 Length=1730004 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 147487 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCT 147546 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| | |||| |||||||||||||| ||||| || ||||||||||| ||||| | Sbjct 147547 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATG 147606 Query 24277 C 24277 | Sbjct 147607 C 147607 Score = 100 bits (110), Expect = 3e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 24686 |||| ||| || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 149176 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 149235 Query 24687 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 ||| |||| ||||| |||||||| ||||||| ||||| |||| Sbjct 149236 TCAGGATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTT 149278 >seq11199 Length=1679328 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 24686 |||| ||| || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 641027 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 640968 Query 24687 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 ||| |||| ||||| || ||||| ||||||| ||||| |||| Sbjct 640967 TCAGGATACTGAATAGGGAAAATGACAAATCGTTTTGGGTTTT 640925 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 643635 Query 24277 C 24277 | Sbjct 643634 C 643634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593085709323360