Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq16192 89.7 6e-13 seq1474 84.2 3e-11 seq13173 82.4 9e-11 >seq16192 Length=2652217 Score = 89.7 bits (98), Expect = 6e-13 Identities = 172/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 83144 AACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGG 83203 ||||||||||| ||||| | | |||||| | |||||| ||| ||| | || | | | Sbjct 10088 AACTTCTCGAAATTCCAAGTGATGTCGTTTCTGCACACGGGACTCCACACGATAAATTTG 10029 Query 83204 GGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAG 83263 ||||| ||| || | | || ||||| || || || ||| |||||| Sbjct 10028 GGGTCATTCATGAAGGGCATTGGCTCATCGCTCGGGAATGGAAGTTTCTCCTTAAGGAAG 9969 Query 83264 GCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTC 83323 ||||||| || || || || ||||| || ||| |||||| |||||| || || Sbjct 9968 ACGAAGAGAGGGTGAGCGGTTTTCCCGTTCACGTCGACCTTCTCCAAGAGCTGGAATTTA 9909 Query 83324 GGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGG 83383 || || ||||| || ||||||||||| | ||| | ||| || | |||||| |||| || Sbjct 9908 GGTTCAAAGCCATTGCCAGGACGGACATACTTTAAGGACGGAAGGATCTCTTCATT-TGT 9850 Query 83384 GC-GTTTTCCT 83393 | |||||||| Sbjct 9849 ACAGTTTTCCT 9839 >seq1474 Length=917957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 173/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 83144 AACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGG 83203 |||||||| || ||||| || || || || | |||||| ||| ||| |||| | | | Sbjct 359944 AACTTCTCAAAATTCCAAGCGACATCATTTCTGCACACAGGACTCCACACAATAAATTTG 360003 Query 83204 GGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAG 83263 |||||| ||| || | | || ||||| || || || ||| |||||| Sbjct 360004 GGGTCGTTCATGAAGGGCATTGGCTCATCGCTCGGGAATGGAAGTTTCTCCTTGAGGAAG 360063 Query 83264 GCGAAGAGCGGATGTGCC-CTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 | ||||| || || | ||| | ||||| || || |||||| |||||| || || Sbjct 360064 ACAAAGAGAGGGTGAGTGGCTTTC-CCGTTCACGTCAACCTTCTCCAAGAGCTGGAATTT 360122 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTG 83382 || || ||||| || ||||||||||| | ||||| ||| || | |||||| |||| || Sbjct 360123 AGGTTCAAAGCCATTGCCAGGACGGACATACTTCAAGGACGGAAGGATCTCTTCATT-TG 360181 Query 83383 GGC-GTTTTCCT 83393 | |||||||| Sbjct 360182 TACAGTTTTCCT 360193 >seq13173 Length=950820 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||| ||||| || | | ||| ||| |||| |||| | Sbjct 453839 GAACTTCTCAAAGTTCCAGGAGACGTCATTCCTGTTCACCGGACTCCAGATGATGAATTT 453898 Query 83203 GGGGTCGCTCACGAGCGTGCTCAT-GTCGTCGCTAGGCGCCGGCAGGGCCTCTCGT--AG 83259 ||| || | || | | | || |||||| || ||| ||||| | |||| | || Sbjct 453899 GGGATCACCCATCAAGGA-CACAGAGTCGTCACTGGGCTGAGGCAG--CTTCTCCTTGAG 453955 Query 83260 GAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAA 83319 ||| | || || ||||| || | ||||||| || || |||||| | || || Sbjct 453956 GAACACAAACAGAGGATGGGCGTTCTCACCGTTCACTTCCAGCTTCTCCAGAAGTTGGAA 454015 Query 83320 GTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGA 83361 || ||||||||||| || ||||||||||||| |||||| || Sbjct 454016 TTTTGGCTCGAAGCCATTTCCAGGACGGACGTACTTCAGAGA 454057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608144763407280