Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq46 138 1e-27
seq13143 136 5e-27
seq20828 107 2e-18
seq20691 98.7 1e-15
seq19301 96.9 4e-15
seq16217 96.9 4e-15
seq20611 95.1 1e-14
seq14550 93.3 5e-14
seq11300 89.7 6e-13
seq24242 87.8 2e-12
seq12096 84.2 2e-11
seq17755 82.4 9e-11
seq3435 82.4 9e-11
>seq46
Length=2207375
Score = 138 bits (152), Expect = 1e-27
Identities = 177/244 (73%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || | || | ||||| || | ||| |||||| || || ||||| || | |
Sbjct 2030780 CCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2030721
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| |||||||| || || ||||||||||| | ||
Sbjct 2030720 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 2030661
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || |||||||| |||||| ||| | || | | |||||||| | || ||
Sbjct 2030660 ATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 2030601
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCGAAT 43196
|||| |||||||| ||||| || |||||||| |||||||| ||||| ||||||| ||
Sbjct 2030600 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCTAAAA 2030541
Query 43197 ACAA 43200
||||
Sbjct 2030540 ACAA 2030537
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||| | ||||| || | ||| |||||| || || ||||| || | |
Sbjct 2031008 CCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2030949
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| |||||||| || || ||||||||||| | ||
Sbjct 2030948 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 2030889
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || ||||| ||| ||| || |||| || | | |||||||| | || ||
Sbjct 2030888 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 2030829
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| |||||||| ||||| || |||||||| || ||||| |||||
Sbjct 2030828 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2030782
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| || | ||| | ||| |||||| || || ||||| || | ||| || || |
Sbjct 2031886 ACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 2031827
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || ||||||||||||||||| || || ||||||||||| | || | || |||||
Sbjct 2031826 ATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 2031767
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| |||||| ||||| || | | |||||||| | || || |||| |||||
Sbjct 2031766 GTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGAT 2031707
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || | ||||| || ||||| |||||
Sbjct 2031706 GGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031671
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||| | ||||| || | ||| |||||| || || ||||| || | |
Sbjct 2031441 CCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2031382
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||||||||| || || || ||||||||||| | ||
Sbjct 2031381 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 2031322
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || ||||||||| ||| || |||| || | | |||||||| | || ||
Sbjct 2031321 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCTATGGTGTCGCTGGGCTCAACC 2031262
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
|||| ||||||||||| || || | ||||| ||||
Sbjct 2031261 TCGAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAA 2031225
Score = 89.7 bits (98), Expect = 6e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 42967 AACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCT 43026
|||||| || | ||| | ||| ||| || || || ||||| || | |||||| ||
Sbjct 2031226 AACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTC 2031167
Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086
| || || | ||| || || ||||| || | ||||||||||| | || | || ||||
Sbjct 2031166 CATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCT 2031107
Query 43087 TGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
| ||| ||| || |||| || | | |||||||| | || || |||| ||||
Sbjct 2031106 TATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGA 2031047
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| ||||| || | ||||| || ||||| |||||
Sbjct 2031046 TGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031010
>seq13143
Length=1991197
Score = 136 bits (150), Expect = 5e-27
Identities = 171/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||||| || | ||| | ||| ||||| || || |||||||||| |
Sbjct 1624820 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 1624761
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || | |||||| ||||| || || || ||||||||||| | ||
Sbjct 1624760 AGCGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 1624701
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || |||||||| |||||| ||||| || | | |||||||| | || ||
Sbjct 1624700 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 1624641
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGC 43191
|||| |||||||| ||||| || |||||||| || ||||| ||||| |||||||
Sbjct 1624640 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATCTTTACGC 1624586
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| || | ||||| ||| |||||| || || ||||| || | ||| || || |
Sbjct 1626603 ACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCC 1626544
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||| |||||||| || || ||||||||||| | || | || |||||
Sbjct 1626543 ATCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 1626484
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || || | || | | |||||||| | || || |||| |||||
Sbjct 1626483 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGAT 1626424
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || || || || |||||||| |||||
Sbjct 1626423 GGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1626388
>seq20828
Length=894333
Score = 107 bits (118), Expect = 2e-18
Identities = 93/111 (84%), Gaps = 6/111 (5%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 28914 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 28973
Query 60122 ACTATACTACCGAGGATTGAATATATAACTTGAATATTA-CAATCCTATTT 60171
||||||||| |||||| || ||| |||| |||| ||| ||| || ||||
Sbjct 28974 ACTATACTAACGAGGAGTG-ATA-ATAA---GAATCTTATCAACCCCATTT 29019
>seq20691
Length=595870
Score = 98.7 bits (108), Expect = 1e-15
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 554053 TTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 553994
Query 60123 CTATACTACCGAGGATTGA 60141
|||||||| |||||| |||
Sbjct 553993 CTATACTAACGAGGAGTGA 553975
>seq19301
Length=1192634
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 590036 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 590095
Query 60125 ATACTACCGAGGATTG 60140
|||||| |||||| ||
Sbjct 590096 ATACTAACGAGGAGTG 590111
>seq16217
Length=694317
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 146588 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 146647
Query 60125 ATACTACCGAGGATTG 60140
|||||| |||||| ||
Sbjct 146648 ATACTAACGAGGAGTG 146663
>seq20611
Length=922441
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || | ||||||||||| |||||| ||| ||| ||||| || ||||| |||| |
Sbjct 520317 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 520376
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| || || | || || ||||| || || || || || | | ||||||||| | ||
Sbjct 520377 AATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 520436
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| | || || ||| ||| || |||| || | | ||||| || | || ||
Sbjct 520437 ATACCTTCTTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACC 520496
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| ||||| || | ||||| || ||||| |||||
Sbjct 520497 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 520543
>seq14550
Length=541
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||
Sbjct 225 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 166
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 165 TATACTAACGAGGA 152
>seq11300
Length=377726
Score = 89.7 bits (98), Expect = 6e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 165136 TTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 165195
Query 60123 CTATACTACCGAGGATTGA 60141
|||||||| ||||| |||
Sbjct 165196 CTATACTAATGAGGAGTGA 165214
>seq24242
Length=200
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || ||||||||||||||| ||||| |||||| |||||| || ||||| | |||
Sbjct 56 TCTCCCCGTCAGGGAATCGAACCCCGGTCTTCCGCGTCACAGGCAGAGATACTGCCAACT 115
Query 60125 ATACTACCGAGGATTG 60140
|||||| |||||||||
Sbjct 116 ATACTAACGAGGATTG 131
>seq12096
Length=991
Score = 84.2 bits (92), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||||| | ||||||| ||||||||||| | ||||| |||| ||| ||||| |||||
Sbjct 85 TCTCCTCATCTGGGAATCAAACCCTGGTCTTCTGCGTGTCAGGTGGAGATACTGTCCACT 144
Query 60125 ATACTACCGAGG-ATTGAATATATAA 60149
|||||| |||| |||| ||||||||
Sbjct 145 ATACTAATGAGGAATTGTATATATAA 170
>seq17755
Length=1282
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||| || ||||||||||||| | ||| |||||
Sbjct 159 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCACGTGACAGGCGGAGAGACTGTCCACT 218
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 219 ATACTAACGAGGA 231
>seq3435
Length=1289550
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | ||||||||||||| ||| | |||||||||||||| ||||| |||
Sbjct 232 TTTCTCCCCGTCGGGGAATCGAACCCCGGTTTTCCGCGTGACAGGCGAGGATACTGTCCA 173
Query 60123 CTATACTACCGAGGA 60137
|||||||| ||||||
Sbjct 172 CTATACTAACGAGGA 158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571205169054960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |