Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq46 138 1e-27 seq13143 136 5e-27 seq20828 107 2e-18 seq20691 98.7 1e-15 seq19301 96.9 4e-15 seq16217 96.9 4e-15 seq20611 95.1 1e-14 seq14550 93.3 5e-14 seq11300 89.7 6e-13 seq24242 87.8 2e-12 seq12096 84.2 2e-11 seq17755 82.4 9e-11 seq3435 82.4 9e-11 >seq46 Length=2207375 Score = 138 bits (152), Expect = 1e-27 Identities = 177/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | || | ||||| || | ||| |||||| || || ||||| || | | Sbjct 2030780 CCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2030721 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| |||||||| || || ||||||||||| | || Sbjct 2030720 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 2030661 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||| |||||| ||| | || | | |||||||| | || || Sbjct 2030660 ATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 2030601 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCGAAT 43196 |||| |||||||| ||||| || |||||||| |||||||| ||||| ||||||| || Sbjct 2030600 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCTAAAA 2030541 Query 43197 ACAA 43200 |||| Sbjct 2030540 ACAA 2030537 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||| || | ||| |||||| || || ||||| || | | Sbjct 2031008 CCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2030949 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| |||||||| || || ||||||||||| | || Sbjct 2030948 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 2030889 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||| || |||| || | | |||||||| | || || Sbjct 2030888 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 2030829 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| ||||| || |||||||| || ||||| ||||| Sbjct 2030828 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2030782 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | ||| | ||| |||||| || || ||||| || | ||| || || | Sbjct 2031886 ACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 2031827 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||||||||||||||| || || ||||||||||| | || | || ||||| Sbjct 2031826 ATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 2031767 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| ||||| || | | |||||||| | || || |||| ||||| Sbjct 2031766 GTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGAT 2031707 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || | ||||| || ||||| ||||| Sbjct 2031706 GGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031671 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||| || | ||| |||||| || || ||||| || | | Sbjct 2031441 CCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2031382 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||||||||| || || || ||||||||||| | || Sbjct 2031381 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 2031322 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| ||| || |||| || | | |||||||| | || || Sbjct 2031321 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCTATGGTGTCGCTGGGCTCAACC 2031262 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 |||| ||||||||||| || || | ||||| |||| Sbjct 2031261 TCGAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAA 2031225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 42967 AACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCT 43026 |||||| || | ||| | ||| ||| || || || ||||| || | |||||| || Sbjct 2031226 AACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTC 2031167 Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086 | || || | ||| || || ||||| || | ||||||||||| | || | || |||| Sbjct 2031166 CATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCT 2031107 Query 43087 TGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | ||| ||| || |||| || | | |||||||| | || || |||| |||| Sbjct 2031106 TATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGA 2031047 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || | ||||| || ||||| ||||| Sbjct 2031046 TGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031010 >seq13143 Length=1991197 Score = 136 bits (150), Expect = 5e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| || | ||| | ||| ||||| || || |||||||||| | Sbjct 1624820 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 1624761 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || | |||||| ||||| || || || ||||||||||| | || Sbjct 1624760 AGCGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 1624701 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||| |||||| ||||| || | | |||||||| | || || Sbjct 1624700 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 1624641 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGC 43191 |||| |||||||| ||||| || |||||||| || ||||| ||||| ||||||| Sbjct 1624640 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATCTTTACGC 1624586 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | ||||| ||| |||||| || || ||||| || | ||| || || | Sbjct 1626603 ACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCC 1626544 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || || ||||||||||| | || | || ||||| Sbjct 1626543 ATCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 1626484 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | || | | |||||||| | || || |||| ||||| Sbjct 1626483 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGAT 1626424 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || || || |||||||| ||||| Sbjct 1626423 GGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1626388 >seq20828 Length=894333 Score = 107 bits (118), Expect = 2e-18 Identities = 93/111 (84%), Gaps = 6/111 (5%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 28914 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 28973 Query 60122 ACTATACTACCGAGGATTGAATATATAACTTGAATATTA-CAATCCTATTT 60171 ||||||||| |||||| || ||| |||| |||| ||| ||| || |||| Sbjct 28974 ACTATACTAACGAGGAGTG-ATA-ATAA---GAATCTTATCAACCCCATTT 29019 >seq20691 Length=595870 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 554053 TTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 553994 Query 60123 CTATACTACCGAGGATTGA 60141 |||||||| |||||| ||| Sbjct 553993 CTATACTAACGAGGAGTGA 553975 >seq19301 Length=1192634 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 590036 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 590095 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 590096 ATACTAACGAGGAGTG 590111 >seq16217 Length=694317 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 146588 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 146647 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 146648 ATACTAACGAGGAGTG 146663 >seq20611 Length=922441 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||||||||||| |||||| ||| ||| ||||| || ||||| |||| | Sbjct 520317 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 520376 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || ||||| || || || || || | | ||||||||| | || Sbjct 520377 AATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 520436 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || || ||| ||| || |||| || | | ||||| || | || || Sbjct 520437 ATACCTTCTTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACC 520496 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || | ||||| || ||||| ||||| Sbjct 520497 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 520543 >seq14550 Length=541 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 225 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 166 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 165 TATACTAACGAGGA 152 >seq11300 Length=377726 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 165136 TTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 165195 Query 60123 CTATACTACCGAGGATTGA 60141 |||||||| ||||| ||| Sbjct 165196 CTATACTAATGAGGAGTGA 165214 >seq24242 Length=200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || ||||||||||||||| ||||| |||||| |||||| || ||||| | ||| Sbjct 56 TCTCCCCGTCAGGGAATCGAACCCCGGTCTTCCGCGTCACAGGCAGAGATACTGCCAACT 115 Query 60125 ATACTACCGAGGATTG 60140 |||||| ||||||||| Sbjct 116 ATACTAACGAGGATTG 131 >seq12096 Length=991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||||| | ||||||| ||||||||||| | ||||| |||| ||| ||||| ||||| Sbjct 85 TCTCCTCATCTGGGAATCAAACCCTGGTCTTCTGCGTGTCAGGTGGAGATACTGTCCACT 144 Query 60125 ATACTACCGAGG-ATTGAATATATAA 60149 |||||| |||| |||| |||||||| Sbjct 145 ATACTAATGAGGAATTGTATATATAA 170 >seq17755 Length=1282 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| || ||||||||||||| | ||| ||||| Sbjct 159 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCACGTGACAGGCGGAGAGACTGTCCACT 218 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 219 ATACTAACGAGGA 231 >seq3435 Length=1289550 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||| | |||||||||||||| ||||| ||| Sbjct 232 TTTCTCCCCGTCGGGGAATCGAACCCCGGTTTTCCGCGTGACAGGCGAGGATACTGTCCA 173 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 172 CTATACTAACGAGGA 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571205169054960