Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq1581 104 2e-17
seq20611 95.1 9e-15
seq46 84.2 2e-11
>seq1581
Length=2594311
Score = 104 bits (114), Expect = 2e-17
Identities = 164/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||||| || | || |||| || | || || ||||| || ||||||||||| | |
Sbjct 1373171 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1373230
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| || |||||||| |||||||| || |||| || || || || || |||
Sbjct 1373231 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1373290
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| |||||| || || || | | |||||| | ||| ||||| | ||||||
Sbjct 1373291 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACC 1373350
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333
|||| ||||||| | ||||| || | ||||| ||||| || ||||| | |||||
Sbjct 1373351 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATCTATAAAC 1373405
>seq20611
Length=922441
Score = 95.1 bits (104), Expect = 9e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|| || |||||||| ||||||||||| | || ||| || |||||||| ||||||||
Sbjct 520347 GTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACCATCTTCCAGCTGTTTGCCG 520406
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248
||| |||| | || || || || ||| | ||||| ||||| || | ||||
Sbjct 520407 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATACCTTCTTTATCCTGGATCTTAGCCTTG 520466
Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308
|| | ||| ||||||| ||||| |||| ||||||| | ||||| ||||| ||
Sbjct 520467 ACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTC 520526
Query 18309 TTTACAAAAATTTGCAT 18325
|| || || || |||||
Sbjct 520527 TTGACGAAGATCTGCAT 520543
Score = 82.4 bits (90), Expect = 6e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|| || ||||| || ||||||||||| | || ||| | |||||||| ||||||||
Sbjct 520575 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCG 520634
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248
||| |||| | || || || || ||| | |||||| || || || | ||||
Sbjct 520635 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTG 520694
Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308
|| | ||| ||||| | ||||| |||| ||||||| | || || || | |||
Sbjct 520695 ACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTT 520754
Query 18309 TTTACAAAAATTTGCATTTTTAAAC 18333
|| ||||| || ||||| | |||||
Sbjct 520755 TTGACAAAGATCTGCATCTATAAAC 520779
>seq46
Length=2207375
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||||| || | || |||| ||| || || || || || || ||||||||||||| |
Sbjct 2030780 CCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2030721
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| || ||||| || |||| || | || || || ||
Sbjct 2030720 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 2030661
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||||||| || |||| | || || || | ||| ||||| | ||||||
Sbjct 2030660 ATGCCTTCCTTGTCTTGGATTT-TAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAAC 2030602
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330
|| | ||||||| | ||||| |||| || || ||||| || ||||| ||||
Sbjct 2030601 CTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTA 2030549
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || || ||||| || ||||||||||||| || || | ||||||||| |||
Sbjct 2031212 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAACTGT 2031153
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
||||| || |||| | | || || || || | |||||||||||| || |
Sbjct 2031152 TTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 2031093
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
|||||| | ||| ||||| | |||||| || | ||||||| | ||||| |||
Sbjct 2031092 GCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 2031033
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
|| || || || || || |||||
Sbjct 2031032 AAGGTCTTCACGAAGATCTGCAT 2031010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378947870265090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |