Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq16819 111 1e-19
seq11199 111 1e-19
seq11759 104 2e-17
seq3398 86.0 6e-12
>seq16819
Length=1945512
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| || || || | ||| ||||| | ||||| || |||
Sbjct 739162 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 739103
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| || |||| |||||| || ||||||||||| ||||| |||||||| ||||| ||
Sbjct 739102 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 739043
Query 11774 ACTACTCTTTCTCC 11787
|| ||||| || ||
Sbjct 739042 ACCACTCTCTCCCC 739029
>seq11199
Length=1679328
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| || | || | ||||||||||| |||| ||| ||
Sbjct 643752 TCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCTTC 643693
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| | || ||||||||||| ||||| ||||| || || ||||| ||||||||||||
Sbjct 643692 AACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATGCT 643633
Query 11774 ACTACTCTTTCTCC 11787
|||| || |||||
Sbjct 643632 ACTAATCGCTCTCC 643619
>seq11759
Length=1730004
Score = 104 bits (114), Expect = 2e-17
Identities = 107/139 (77%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708
||||| | ||||| || || |||||||| || | || | ||||||||||| || | ||
Sbjct 147485 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTT 147543
Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768
| || | ||| | || ||||||||||| ||||| ||||| || || || || |||||||
Sbjct 147544 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAA 147603
Query 11769 ATGCTACTACTCTTTCTCC 11787
||||||||| || |||||
Sbjct 147604 ATGCTACTAATCGCTCTCC 147622
>seq3398
Length=854497
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| |||||||| | ||||| | ||| || || ||||||||||| || || ||
Sbjct 30069 ACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGATT 30010
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
|||||||| || | | || |||| || || ||||| ||||| || || | || ||
Sbjct 30009 GACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAGA 29950
Query 37258 CTATTTCTCAATCCATG 37274
|| || | || ||||||
Sbjct 29949 CTGTTACGCACTCCATG 29933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468022998226080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |