Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq16819 111 1e-19 seq11199 111 1e-19 seq11759 104 2e-17 seq3398 86.0 6e-12 >seq16819 Length=1945512 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || || || | ||| ||||| | ||||| || ||| Sbjct 739162 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 739103 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || |||| |||||| || ||||||||||| ||||| |||||||| ||||| || Sbjct 739102 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 739043 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 739042 ACCACTCTCTCCCC 739029 >seq11199 Length=1679328 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || | || | ||||||||||| |||| ||| || Sbjct 643752 TCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCTTC 643693 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| | || ||||||||||| ||||| ||||| || || ||||| |||||||||||| Sbjct 643692 AACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATGCT 643633 Query 11774 ACTACTCTTTCTCC 11787 |||| || ||||| Sbjct 643632 ACTAATCGCTCTCC 643619 >seq11759 Length=1730004 Score = 104 bits (114), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | ||||| || || |||||||| || | || | ||||||||||| || | || Sbjct 147485 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTT 147543 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 | || | ||| | || ||||||||||| ||||| ||||| || || || || ||||||| Sbjct 147544 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAA 147603 Query 11769 ATGCTACTACTCTTTCTCC 11787 ||||||||| || ||||| Sbjct 147604 ATGCTACTAATCGCTCTCC 147622 >seq3398 Length=854497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| |||||||| | ||||| | ||| || || ||||||||||| || || || Sbjct 30069 ACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGATT 30010 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 |||||||| || | | || |||| || || ||||| ||||| || || | || || Sbjct 30009 GACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAGA 29950 Query 37258 CTATTTCTCAATCCATG 37274 || || | || |||||| Sbjct 29949 CTGTTACGCACTCCATG 29933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468022998226080