Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq85036 118 1e-21 seq19301 118 1e-21 seq3398 118 1e-21 seq16819 105 9e-18 seq11759 105 9e-18 seq11199 102 1e-16 >seq85036 Length=2202 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| ||||||||||| ||||| || || ||| | |||||| | ||| Sbjct 1123 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 1064 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 |||||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 1063 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 1004 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGG 66205 || |||| ||| ||||| | | |||| || Sbjct 1003 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 974 >seq19301 Length=1192634 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| ||||||||||| ||||| || || ||| | |||||| | ||| Sbjct 386050 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCT 386109 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 |||||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 386110 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 386169 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGG 66205 || |||| ||| || || | | |||| || Sbjct 386170 GGGCTCCAGGTACATAGCAAAAGCTCCTGG 386199 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 380616 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 380675 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 380676 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 380735 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 65074 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 380736 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 380784 >seq3398 Length=854497 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| ||||||||||| ||||| || || ||| | |||||| | ||| Sbjct 22329 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 22270 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 |||||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 22269 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 22210 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGG 66205 || |||| ||| ||||| | | |||| || Sbjct 22209 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 22180 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 30534 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 30475 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 30474 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 30415 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 |||| | || ||||| | ||| ||||| | | ||| | || ||||| Sbjct 30414 TTTGCGAGATCTCCCACACAGTCTTATACAGTTCCTTCAGGTCATCTGG 30366 >seq16819 Length=1945512 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| | Sbjct 739164 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 739105 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 739104 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 739045 Query 36300 CAATAAGTCTCTCTCC 36315 | | | |||||| || Sbjct 739044 CCACCACTCTCTCCCC 739029 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 36668 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 36727 ||||| || || ||||||||||| || ||||| | |||||||||||| || ||||||||| Sbjct 738107 GTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTGGA 738048 Query 36728 AAAATAACAAA 36738 ||||| ||||| Sbjct 738047 AAAATTACAAA 738037 >seq11759 Length=1730004 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 147487 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCT 147546 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| | |||| |||||||||||||| ||||| || ||||||||||| ||||| | Sbjct 147547 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATG 147606 Query 36300 CAATAAGTCTCTCTCC 36315 | | | || |||||| Sbjct 147607 CTACTAATCGCTCTCC 147622 Score = 96.9 bits (106), Expect = 5e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 36650 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 36709 |||| ||| || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 149176 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 149235 Query 36710 TCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 ||| |||| ||||| |||||||| ||||||| ||| | |||| Sbjct 149236 TCAGGATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTT 149278 >seq11199 Length=1679328 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 643635 Query 36300 CAATAAGTCTCTCTCC 36315 | | | || |||||| Sbjct 643634 CTACTAATCGCTCTCC 643619 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 36650 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 36709 |||| ||| || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 641027 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 640968 Query 36710 TCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 ||| |||| ||||| || ||||| ||||||| ||| | |||| Sbjct 640967 TCAGGATACTGAATAGGGAAAATGACAAATCGTTTTGGGTTTT 640925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657467880476880