Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1581 107 2e-18 seq20611 102 8e-17 >seq1581 Length=2594311 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || ||||| ||||| |||||||| ||| Sbjct 1373201 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCA 1373260 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| | ||||| || || || |||||||||||||| ||| ||| || Sbjct 1373261 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCCTTG 1373320 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| | ||||| ||||||| ||| | |||||||| || | ||| Sbjct 1373321 ACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTT 1373380 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 1373381 TTGACAAAGATCTGCAT 1373397 >seq20611 Length=922441 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 |||||| || | || | || ||||||||||| ||||| || || || ||||| Sbjct 520328 ACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACC 520387 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| |||||||| || ||| |||||| | ||||| || || || || |||||||| Sbjct 520388 ATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATACCTTCTTT 520447 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | || | ||||| | ||||| ||||||| ||| | Sbjct 520448 ATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGAT 520507 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| || || ||||| || ||||| Sbjct 520508 GGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 520543 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || ||||| ||||| |||||||| || Sbjct 520575 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCG 520634 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || || || |||||||||||||| ||| || || Sbjct 520635 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTG 520694 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||||| ||||||| ||| | ||||| || || | ||| Sbjct 520695 ACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTT 520754 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 520755 TTGACAAAGATCTGCAT 520771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495532703054400