Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq16819 123 4e-23 seq6006 120 4e-22 seq85036 118 2e-21 seq19301 118 2e-21 seq3398 118 2e-21 seq11759 114 2e-20 seq11199 111 2e-19 >seq16819 Length=1945512 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| | Sbjct 739164 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 739105 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| ||||||||||||||||||||||| || || ||||| | Sbjct 739104 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 739045 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 739044 CCACCACTCTCTCCCC 739029 >seq6006 Length=139621 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| | Sbjct 86163 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86222 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| ||||| ||||||||||||||||| || || ||||| | Sbjct 86223 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 86282 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 86283 CCACCACTCTCTCCCC 86298 >seq85036 Length=2202 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| || Sbjct 1119 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 1060 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| || Sbjct 1059 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 1000 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | |||| |||| Sbjct 999 TCCAGGTACATGGCAAAAGCTCCTGGTC 972 >seq19301 Length=1192634 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| || Sbjct 386054 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCTCTGT 386113 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| || Sbjct 386114 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 386173 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| || || | | |||| |||| Sbjct 386174 TCCAGGTACATAGCAAAAGCTCCTGGTC 386201 Score = 105 bits (116), Expect = 1e-17 Identities = 127/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || |||||| ||| | || || || || ||||| | Sbjct 380616 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 380675 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 380676 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 380735 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 78953 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 380736 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 380784 >seq3398 Length=854497 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| || Sbjct 22325 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 22266 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| || Sbjct 22265 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 22206 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | |||| |||| Sbjct 22205 TCCAGGTACATGGCAAAAGCTCCTGGTC 22178 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || |||||| ||| | || || || || ||||| | Sbjct 30534 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 30475 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 30474 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 30415 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 |||| | || ||||| | ||| ||||| | | ||| | || ||||| Sbjct 30414 TTTGCGAGATCTCCCACACAGTCTTATACAGTTCCTTCAGGTCATCTGG 30366 >seq11759 Length=1730004 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| | |||||||||||||| ||||| | || | Sbjct 147487 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCT 147546 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| | |||| |||||||| ||||| |||||||| ||||||||||| ||||| | Sbjct 147547 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATG 147606 Query 50102 CAACAAGTCTCTCTCC 50117 | || | || |||||| Sbjct 147607 CTACTAATCGCTCTCC 147622 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 50452 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 50511 |||| || || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 149176 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 149235 Query 50512 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| |||| || || || ||||| ||||||| ||||| ||| Sbjct 149236 TCAGGATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTT 149277 >seq11199 Length=1679328 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| | |||||||||||||| ||||| | || | Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| | |||| |||||||| ||||| |||||||| ||||| ||||| ||||| | Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 643635 Query 50102 CAACAAGTCTCTCTCC 50117 | || | || |||||| Sbjct 643634 CTACTAATCGCTCTCC 643619 Score = 89.7 bits (98), Expect = 7e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 50452 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 50511 |||| || || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 641027 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 640968 Query 50512 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| |||| || || |||||||| ||||||| ||||| ||| Sbjct 640967 TCAGGATACTGAATAGGGAAAATGACAAATCGTTTTGGGTTT 640926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717499516158480