Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq11199 107 2e-18 seq6006 105 6e-18 seq11759 102 8e-17 >seq11199 Length=1679328 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || || | || | ||| ||||||| |||| ||| | Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| | Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 643635 Query 14014 CTATTAATCGTTCTCCAAA 14032 ||| |||||| ||||| || Sbjct 643634 CTACTAATCGCTCTCCTAA 643616 >seq6006 Length=139621 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || |||||||| || || || || | ||| ||||| | ||||| || | Sbjct 86163 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86222 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| ||| || || | |||||| |||||||||||||| ||||| || || |||||||| | Sbjct 86223 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 86282 Query 14014 C 14014 | Sbjct 86283 C 86283 Score = 86.0 bits (94), Expect = 6e-12 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || ||||| | | || |||||||||||||| ||||||||||| || ||||| Sbjct 86774 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATGGCAATCTGG 86833 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAA 14247 ||||| || ||||| | ||||| | | ||| |||||| ||||||| Sbjct 86834 AAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACTTCCTGAGTAAA 86880 >seq11759 Length=1730004 Score = 102 bits (112), Expect = 8e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || || | || | ||| ||||||| || | ||| | Sbjct 147487 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCT 147546 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| | Sbjct 147547 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATG 147606 Query 14014 CTATTAATCGTTCTCCAAA 14032 ||| |||||| ||||| || Sbjct 147607 CTACTAATCGCTCTCCTAA 147625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479214199318800