Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq11199 107 2e-18
seq6006 105 6e-18
seq11759 102 8e-17
>seq11199
Length=1679328
Score = 107 bits (118), Expect = 2e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| || || ||||| || || | || | ||| ||||||| |||| ||| |
Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| |
Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 643635
Query 14014 CTATTAATCGTTCTCCAAA 14032
||| |||||| ||||| ||
Sbjct 643634 CTACTAATCGCTCTCCTAA 643616
>seq6006
Length=139621
Score = 105 bits (116), Expect = 6e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| || |||||||| || || || || | ||| ||||| | ||||| || |
Sbjct 86163 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86222
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
||| ||| || || | |||||| |||||||||||||| ||||| || || |||||||| |
Sbjct 86223 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 86282
Query 14014 C 14014
|
Sbjct 86283 C 86283
Score = 86.0 bits (94), Expect = 6e-12
Identities = 84/107 (79%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201
||||| || ||||| | | || |||||||||||||| ||||||||||| || |||||
Sbjct 86774 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATGGCAATCTGG 86833
Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAA 14247
||||| || ||||| | ||||| | | ||| |||||| |||||||
Sbjct 86834 AAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACTTCCTGAGTAAA 86880
>seq11759
Length=1730004
Score = 102 bits (112), Expect = 8e-17
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| || || ||||| || || | || | ||| ||||||| || | ||| |
Sbjct 147487 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCT 147546
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| |
Sbjct 147547 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATG 147606
Query 14014 CTATTAATCGTTCTCCAAA 14032
||| |||||| ||||| ||
Sbjct 147607 CTACTAATCGCTCTCCTAA 147625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479214199318800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |