Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq20611 93.3 3e-14
seq13143 93.3 3e-14
seq1581 82.4 5e-11
>seq20611
Length=922441
Score = 93.3 bits (102), Expect = 3e-14
Identities = 164/238 (69%), Gaps = 6/238 (3%)
Strand=Plus/Plus
Query 33136 ATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTA 33195
|||| ||| || || | |||||||||| |||||| || ||||||||||| || |||||
Sbjct 520310 ATCTGAACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTA 520369
Query 33196 ATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTC 33255
|||||||| || | || |||| || || || ||| || || | ||||||||
Sbjct 520370 GTCAGACAATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTC 520429
Query 33256 CGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312
| ||| || |||||||| || | | | ||| || || | | ||| ||||| |
Sbjct 520430 AGGGGGAATACCTTCTTTATCCTGGATCTTAGCC---TTGACGTTCTCAATGGTGTCACT 520486
Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| | ||| || || || || || || || || | || || ||||| || ||||||
Sbjct 520487 TGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 520544
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| ||| | |||||| || |||||||| || || ||||| |||||||| || |
Sbjct 520557 CGCAGCACAAGATGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA 520616
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||| || || || ||| || || | |||||||| | ||| |||||||||||
Sbjct 520617 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 520676
Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || | | ||| |||||| | || | ||| || || ||
Sbjct 520677 TCCTGGATCTTAGCC---TTGACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTG 520733
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || || || ||||| || || || |||||
Sbjct 520734 ATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 520771
>seq13143
Length=1991197
Score = 93.3 bits (102), Expect = 3e-14
Identities = 163/236 (69%), Gaps = 6/236 (3%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| ||||| | |||| || | ||| | || || || || || || |||||||||||
Sbjct 1624821 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 1624762
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| || || || ||||| ||||| ||| ||| || | ||| |||||||| | ||
Sbjct 1624761 CAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 1624702
Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
|||||||| || || | | | || ||| || | | ||| |||||| |||| |
Sbjct 1624701 GATGCCTTCCTTGTCTTGGATTTTAGC---TTTGACGTTCTCAATGGTGTCGCTGGGCTC 1624645
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374
||| || || || || || || || || || || || ||||| || ||||| ||||
Sbjct 1624644 AACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATCTTTA 1624589
>seq1581
Length=2594311
Score = 82.4 bits (90), Expect = 5e-11
Identities = 161/237 (68%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 33136 ATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTA 33195
|||| ||| || || | |||| ||||| |||||| || |||||||| || || |||||
Sbjct 1373164 ATCTGAACCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTA 1373223
Query 33196 ATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTC 33255
||||||| || | || |||| || || ||| || || | | ||||||||
Sbjct 1373224 GTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTC 1373283
Query 33256 CGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312
| ||| ||||||||||| || | | | ||| || || | | ||| |||||| |
Sbjct 1373284 AGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCC---TTGACGTTCTCAATGGTGTCGCT 1373340
Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| | || || || || || || || || || || ||||| || || || |||||
Sbjct 1373341 TGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1373397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318444716690436
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |