Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq20611 93.3 3e-14 seq13143 93.3 3e-14 seq1581 82.4 5e-11 >seq20611 Length=922441 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 33136 ATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTA 33195 |||| ||| || || | |||||||||| |||||| || ||||||||||| || ||||| Sbjct 520310 ATCTGAACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTA 520369 Query 33196 ATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTC 33255 |||||||| || | || |||| || || || ||| || || | |||||||| Sbjct 520370 GTCAGACAATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTC 520429 Query 33256 CGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 | ||| || |||||||| || | | | ||| || || | | ||| ||||| | Sbjct 520430 AGGGGGAATACCTTCTTTATCCTGGATCTTAGCC---TTGACGTTCTCAATGGTGTCACT 520486 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || | ||| || || || || || || || || | || || ||||| || |||||| Sbjct 520487 TGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 520544 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| | |||||| || |||||||| || || ||||| |||||||| || | Sbjct 520557 CGCAGCACAAGATGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA 520616 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || || ||| || || | |||||||| | ||| ||||||||||| Sbjct 520617 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 520676 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| |||||| | || | ||| || || || Sbjct 520677 TCCTGGATCTTAGCC---TTGACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTG 520733 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||| || || || ||||| Sbjct 520734 ATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 520771 >seq13143 Length=1991197 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | |||| || | ||| | || || || || || || ||||||||||| Sbjct 1624821 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 1624762 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || || || ||||| ||||| ||| ||| || | ||| |||||||| | || Sbjct 1624761 CAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 1624702 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 |||||||| || || | | | || ||| || | | ||| |||||| |||| | Sbjct 1624701 GATGCCTTCCTTGTCTTGGATTTTAGC---TTTGACGTTCTCAATGGTGTCGCTGGGCTC 1624645 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 ||| || || || || || || || || || || || ||||| || ||||| |||| Sbjct 1624644 AACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATCTTTA 1624589 >seq1581 Length=2594311 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/237 (68%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 33136 ATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTA 33195 |||| ||| || || | |||| ||||| |||||| || |||||||| || || ||||| Sbjct 1373164 ATCTGAACCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTA 1373223 Query 33196 ATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTC 33255 ||||||| || | || |||| || || ||| || || | | |||||||| Sbjct 1373224 GTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTC 1373283 Query 33256 CGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 | ||| ||||||||||| || | | | ||| || || | | ||| |||||| | Sbjct 1373284 AGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCC---TTGACGTTCTCAATGGTGTCGCT 1373340 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || || || || || || || || || ||||| || || || ||||| Sbjct 1373341 TGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1373397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318444716690436