Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq20611 158 3e-33 seq46 122 2e-22 seq11759 105 2e-17 seq16819 104 5e-17 seq6006 104 5e-17 seq11199 102 2e-16 seq13226 87.8 4e-12 seq19271 86.0 1e-11 >seq20611 Length=922441 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| || || || |||||||| || || |||||| Sbjct 520542 ATGCCTCCCCTGAGACGCAGCACAAGATGCAAAGTGGACTCTTTCTGGATGTTGTAGTCA 520601 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || ||||| || ||||| || | |||||| || ||||| Sbjct 520602 GACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGG 520661 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| || || || || || | || ||||| || || Sbjct 520662 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCA 520721 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || ||||| ||||| |||||||| Sbjct 520722 ACCTCAAGGGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 520771 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| || || || ||||| || || || |||||||| | || | ||| ||||| Sbjct 520335 ACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACCATCTTCC 520394 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || ||||| || ||||| || | |||||| || ||||| || || |||||||||||||| Sbjct 520395 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATACCTTCTTTATCCTGG 520454 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || || || || | ||| || || || || ||||| || || || ||||| Sbjct 520455 ATCTTAGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTG 520514 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || |||||||| Sbjct 520515 CCTGTCAAGGTCTTGACGAAGATCTGCAT 520543 >seq46 Length=2207375 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || || ||||| || || |||||| Sbjct 2031672 ATACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 2031613 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || ||||| || || || | ||| ||||||||| Sbjct 2031612 GACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGA 2031553 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| || || || || Sbjct 2031552 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCA 2031493 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| ||||| || || || || || |||||||| Sbjct 2031492 ACTTCCAAAGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2031443 >seq11759 Length=1730004 Score = 105 bits (116), Expect = 2e-17 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| | ||||| || ||||| || |||||||| || ||||| || || || ||||| Sbjct 147622 GGAGAGCGATTAGTAGCATTTGCAGCAGTAGAAGGCATCTTCTTCTCTGGATCATTTGCT 147563 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || |||| |||||||||||||| ||||| ||||| ||| | || | ||| || ||| | Sbjct 147562 GCCATCTACTGGTTGAAGAAAAGCGGCCTGATGCCCGGACTCACCTACTCCAATGAACTC 147503 Query 269246 ATAAGCAGGGACGAAGGTTTACACT 269270 || ||||| || | ||||| | ||| Sbjct 147502 ATCAGCAGAGATG-AGGTTAAAACT 147479 >seq16819 Length=1945512 Score = 104 bits (114), Expect = 5e-17 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || |||||||| ||||| ||||| || |||||||| ||||||||||| Sbjct 739031 GGAGAGAG--TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCT 739088 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || ||| | Sbjct 739089 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTT 739148 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 739149 ATCAGCAGAGATGA 739162 >seq6006 Length=139621 Score = 104 bits (114), Expect = 5e-17 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || |||||||| ||||| ||||| || |||||||| ||||||||||| Sbjct 86296 GGAGAGAG--TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCT 86239 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || ||| | Sbjct 86238 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTT 86179 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 86178 ATCAGCAGAGATGA 86165 >seq11199 Length=1679328 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| | ||||| || ||||| || || ||||| || ||||| || || || ||||| Sbjct 643619 GGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTTGCT 643678 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || |||| |||||||||||||||||||| ||||| ||| | || | ||| || ||| | Sbjct 643679 GCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCCAATGAACTC 643738 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 643739 ATCAGCAGAGATGA 643752 >seq13226 Length=510458 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || || || ||||| ||||| || || ||||| || | ||| ||||| || || ||||| Sbjct 113423 CCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 113482 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || ||||||||||| | ||||| ||||| |||||||| ||| Sbjct 113483 AGGGTGATGGTCTTACCAGTCAAAGTTTTCACAAAGATCTGCATCTTG 113530 >seq19271 Length=2060642 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||| || ||||| || || || | ||||| || || ||||| |||||||| || Sbjct 1803912 TTCTGAATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGTTTACCAGCAAAGATC 1803853 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458 |||||||| ||||||||||| |||||| Sbjct 1803852 AGCCTCTGCTGATCAGGAGGGATTCCT 1803826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150134394116856