Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq20611 158 3e-33
seq46 122 2e-22
seq11759 105 2e-17
seq16819 104 5e-17
seq6006 104 5e-17
seq11199 102 2e-16
seq13226 87.8 4e-12
seq19271 86.0 1e-11
>seq20611
Length=922441
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || ||||| || || || |||||||| || || ||||||
Sbjct 520542 ATGCCTCCCCTGAGACGCAGCACAAGATGCAAAGTGGACTCTTTCTGGATGTTGTAGTCA 520601
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | || | || ||||| || ||||| || ||||| || | |||||| || |||||
Sbjct 520602 GACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGG 520661
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| ||||| ||||| || || || || || | || ||||| || ||
Sbjct 520662 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCA 520721
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||||||||| || ||||| ||||| ||||||||
Sbjct 520722 ACCTCAAGGGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 520771
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| || || || ||||| || || || |||||||| | || | ||| |||||
Sbjct 520335 ACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACCATCTTCC 520394
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| ||||| || ||||| || | |||||| || ||||| || || ||||||||||||||
Sbjct 520395 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATACCTTCTTTATCCTGG 520454
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || || || || | ||| || || || || ||||| || || || |||||
Sbjct 520455 ATCTTAGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTG 520514
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | || || || || ||||||||
Sbjct 520515 CCTGTCAAGGTCTTGACGAAGATCTGCAT 520543
>seq46
Length=2207375
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || || || | || || || ||||| || || ||||||
Sbjct 2031672 ATACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 2031613
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || || || || || || ||||| || || || | ||| |||||||||
Sbjct 2031612 GACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGA 2031553
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| ||||| || || || || || | ||| || || || ||
Sbjct 2031552 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCA 2031493
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | || || ||||| ||||| || || || || || ||||||||
Sbjct 2031492 ACTTCCAAAGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2031443
>seq11759
Length=1730004
Score = 105 bits (116), Expect = 2e-17
Identities = 111/145 (77%), Gaps = 1/145 (1%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
||||| | ||||| || ||||| || |||||||| || ||||| || || || |||||
Sbjct 147622 GGAGAGCGATTAGTAGCATTTGCAGCAGTAGAAGGCATCTTCTTCTCTGGATCATTTGCT 147563
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
|| |||| |||||||||||||| ||||| ||||| ||| | || | ||| || ||| |
Sbjct 147562 GCCATCTACTGGTTGAAGAAAAGCGGCCTGATGCCCGGACTCACCTACTCCAATGAACTC 147503
Query 269246 ATAAGCAGGGACGAAGGTTTACACT 269270
|| ||||| || | ||||| | |||
Sbjct 147502 ATCAGCAGAGATG-AGGTTAAAACT 147479
>seq16819
Length=1945512
Score = 104 bits (114), Expect = 5e-17
Identities = 104/134 (78%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
||||| || | || |||||||| ||||| ||||| || |||||||| |||||||||||
Sbjct 739031 GGAGAGAG--TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCT 739088
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
|||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || ||| |
Sbjct 739089 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTT 739148
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 739149 ATCAGCAGAGATGA 739162
>seq6006
Length=139621
Score = 104 bits (114), Expect = 5e-17
Identities = 104/134 (78%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
||||| || | || |||||||| ||||| ||||| || |||||||| |||||||||||
Sbjct 86296 GGAGAGAG--TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCT 86239
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
|||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || ||| |
Sbjct 86238 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTT 86179
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 86178 ATCAGCAGAGATGA 86165
>seq11199
Length=1679328
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
||||| | ||||| || ||||| || || ||||| || ||||| || || || |||||
Sbjct 643619 GGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTTGCT 643678
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
|| |||| |||||||||||||||||||| ||||| ||| | || | ||| || ||| |
Sbjct 643679 GCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCCAATGAACTC 643738
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 643739 ATCAGCAGAGATGA 643752
>seq13226
Length=510458
Score = 87.8 bits (96), Expect = 4e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515
|| || || ||||| ||||| || || ||||| || | ||| ||||| || || |||||
Sbjct 113423 CCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 113482
Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || ||||||||||| | ||||| ||||| |||||||| |||
Sbjct 113483 AGGGTGATGGTCTTACCAGTCAAAGTTTTCACAAAGATCTGCATCTTG 113530
>seq19271
Length=2060642
Score = 86.0 bits (94), Expect = 1e-11
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431
|||||||| || ||||| || || || | ||||| || || ||||| |||||||| ||
Sbjct 1803912 TTCTGAATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGTTTACCAGCAAAGATC 1803853
Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458
|||||||| ||||||||||| ||||||
Sbjct 1803852 AGCCTCTGCTGATCAGGAGGGATTCCT 1803826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150134394116856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |