Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq20828 86.0 3e-12 seq7694 86.0 3e-12 seq6038 86.0 3e-12 seq11199 82.4 4e-11 seq345 82.4 4e-11 >seq20828 Length=894333 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||| Sbjct 28511 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 28570 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 28571 ACTGAGCTAACCGGCC 28586 >seq7694 Length=521819 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 44243 TGGCCCGTAAGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 44302 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 44303 TGAGCTAACCGGCC 44316 >seq6038 Length=1472558 Score = 86.0 bits (94), Expect = 3e-12 Identities = 77/95 (81%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11437 AATTAATAA-AAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||| ||| | ||||||| ||||||| | |||||||||| ||||||| ||||||| Sbjct 871385 AATAAATGACAAAATCATGATTGGCCAGTACGGGGATCGAACCCGCGACCTTGGCGTTAT 871444 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||| |||||||||||||| |||| Sbjct 871445 TAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 871479 >seq11199 Length=1679328 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 108737 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 108796 Query 11528 CC 11529 || Sbjct 108797 CC 108798 >seq345 Length=4514074 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1902435 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1902376 Query 11528 CC 11529 || Sbjct 1902375 CC 1902374 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261218137977832