Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq20828 86.0 3e-12
seq7694 86.0 3e-12
seq6038 86.0 3e-12
seq11199 82.4 4e-11
seq345 82.4 4e-11
>seq20828
Length=894333
Score = 86.0 bits (94), Expect = 3e-12
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
|||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||
Sbjct 28511 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 28570
Query 11514 ACTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 28571 ACTGAGCTAACCGGCC 28586
>seq7694
Length=521819
Score = 86.0 bits (94), Expect = 3e-12
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||||
Sbjct 44243 TGGCCCGTAAGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 44302
Query 11516 TGAGCTAATGGGCC 11529
|||||||| ||||
Sbjct 44303 TGAGCTAACCGGCC 44316
>seq6038
Length=1472558
Score = 86.0 bits (94), Expect = 3e-12
Identities = 77/95 (81%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 11437 AATTAATAA-AAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
||| ||| | ||||||| ||||||| | |||||||||| ||||||| |||||||
Sbjct 871385 AATAAATGACAAAATCATGATTGGCCAGTACGGGGATCGAACCCGCGACCTTGGCGTTAT 871444
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||| |||||||||||||| ||||
Sbjct 871445 TAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 871479
>seq11199
Length=1679328
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 108737 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 108796
Query 11528 CC 11529
||
Sbjct 108797 CC 108798
>seq345
Length=4514074
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1902435 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1902376
Query 11528 CC 11529
||
Sbjct 1902375 CC 1902374
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261218137977832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |