Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq7720 147 3e-30 seq9107 134 2e-26 seq9617 120 4e-22 seq20662 118 2e-21 seq5998 118 2e-21 seq19268 116 5e-21 >seq7720 Length=2841229 Score = 147 bits (162), Expect = 3e-30 Identities = 198/276 (72%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 8699 CCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCC 8758 |||||||| || | || || | ||| | || ||| | ||||| ||| |||| ||| Sbjct 1872897 CCTTTGACATTATTGCAAACCAATTTCTGCAGAGAAGCAGTGTTGACAATCTCAAAGCCC 1872956 Query 8759 ACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATG 8818 || | || || || ||||| ||||||||||| | ||||| |||||| || |||| Sbjct 1872957 ACTTTGCCACCAAAAGTGCTCGGTTTCCAGTACTCAGGGGAACAGATGGGATTTCCCATA 1873016 Query 8819 AGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTG 8878 || ||||||||||| | || || |||| || | ||| |||| || |||||||||||| Sbjct 1873017 AGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTCTCCCCAAAGATGGCGTTG 1873076 Query 8879 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAA 8938 | | |||||| || |||| || || || || ||||||||||| || | | ||||| Sbjct 1873077 GTCCTGGGCTTCTCAACCAGCAAGCCAGTATAAAACTCCACAGCATCCACATGCCCGTAC 1873136 Query 8939 AGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | | ||||| ||||| || |||||||||||| Sbjct 1873137 AACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 1873172 Score = 138 bits (152), Expect = 2e-27 Identities = 183/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| || |||||||||||||| |||||| ||| || ||||| Sbjct 1874073 TCACCAATAAGGATGAGCCGTGTGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGC 1874132 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || || || | ||| ||||||| ||||||||| | |||||||| ||||| |||||| Sbjct 1874133 TCCTTCTTTAGTATATCACACACTCGGTTGTGTTCACGCAGCCAGATGGTAGCATACATC 1874192 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || || ||||| ||||| ||||| ||||| || || | || | || || Sbjct 1874193 ATGAGTCCTGGAACCAGTCCAAAGGCCTCATGACCCACGGCAAAGCGACGAGACTCAGGT 1874252 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||||| ||| ||||| || || || || |||| | || ||||| | ||| Sbjct 1874253 ACATGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGATAAACCTCA 1874312 Query 9850 CCGTCAATAATCTG 9863 || || | || ||| Sbjct 1874313 CCATCCAGAACCTG 1874326 Score = 89.7 bits (98), Expect = 7e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | || ||||| |||||||| || || ||||| || | | | | Sbjct 1875230 TCACCTGCGACTCCCATTGGTGTTGGGCAATCGTGTGGGACAGGAGGCAGTGTGCGAGTG 1875289 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| | | Sbjct 1875290 TAGTAGGAGAGATTAGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATAAA 1875349 Query 10407 GGAGGGCTGTCAATCAAATCGG 10428 || ||||| ||||||| || || Sbjct 1875350 GGTGGGCTATCAATCAGATGGG 1875371 >seq9107 Length=1685290 Score = 134 bits (148), Expect = 2e-26 Identities = 196/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8698 CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCC 8757 ||||||||| || | || || | ||| | || ||| | ||||| ||| |||| || Sbjct 1329130 CCCTTTGACATTATTGCAAACCAATTTCTGCAGAGAGGCAGTATTGACAATCTCAAAGCC 1329071 Query 8758 CACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCAT 8817 ||| | || || ||||| || ||||||||||| | ||||| |||||| || |||| Sbjct 1329070 CACTTTGCCACCAAAGGTACTTGGTTTCCAGTACTCGGGGGAACAGATGGGATTTCCCAT 1329011 Query 8818 GAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTT 8877 || ||||||||||| | || || |||| || | ||| |||| || ||||||| ||| Sbjct 1329010 AAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTCTCCCCAAAGATGGTGTT 1328951 Query 8878 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 || | |||||| || |||| | || | || | ||||||||| || | || ||||| Sbjct 1328950 GGTCCTGGGCTTCTCAACCAGCAGCCCAGCATAAAGCTCCACAGCATCCACATCCCCGTA 1328891 Query 8938 AAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | | ||||| ||||| || |||||||||||| Sbjct 1328890 CAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 1328854 Score = 120 bits (132), Expect = 4e-22 Identities = 179/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| || | |||||||||||| |||||| ||| || ||||| Sbjct 1327944 TCACCAATAAGGATGAGCCGTGCGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGC 1327885 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | || || | ||| ||||||| ||||||||| | ||||| || || || |||||| Sbjct 1327884 TCCTGCTTTAGTATATCACACACTCGGTTGTGTTCACGCAGCCATATGGTGGCATACATC 1327825 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || || ||||| ||||| || || ||||| || || | || || || Sbjct 1327824 ATGAGTCCGGGAACCAGTCCAAAGGCTTCGTGACCAACGGCAAAGCGACGGGACTCAGGT 1327765 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||||| ||| ||||| || || || || |||| | || ||||| | ||| Sbjct 1327764 ACATGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGATAAACCTCA 1327705 Query 9850 CCGTCAATAATCTG 9863 || || | || ||| Sbjct 1327704 CCATCCAGAACCTG 1327691 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | || |||||||||||||| || || ||||| || | | | | Sbjct 1326771 TCACCTGCGACTCCCATTGGTGTTGGACAATCGTGCGGGACAGGAGGCAGCGTGCGAGTG 1326712 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| | || Sbjct 1326711 TAGTAGGAGAGATTTGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATATA 1326652 Query 10407 GGAGGGCTGTCAATCAAATCGG 10428 |||||||| ||||||| || || Sbjct 1326651 GGAGGGCTATCAATCAGATGGG 1326630 >seq9617 Length=2863312 Score = 120 bits (132), Expect = 4e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || ||||| ||||| | |||||||||||||| || || || | ||| ||||||||| Sbjct 2728179 CCTATAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTAGGATGTTCT 2728238 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 ||||||| | ||| ||||| | |||||| || | ||||| | || |||||||| || Sbjct 2728239 TGTTTCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTG 2728298 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 ||||| |||| ||||||||| | ||||| || | ||||| || | || || Sbjct 2728299 AGACCCGGCAGCAGGCCAAACACTTCTTGCCCAATGGCCAGCTGCTGCTCCGGTGGGACA 2728358 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACC 9851 || || ||| |||| | ||| | ||||| || | |||||||||||| ||||| Sbjct 2728359 GACGGCGGGTAGCTCATTTTGACCGGTGCATCTAGTACTGTGGGGGGATACATCTCACC 2728417 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || || || || ||||| |||||||| | |||||||| | || ||||||||||| Sbjct 2720965 CCCCCAAATGTACTGGGCTTCCAGTACTCAGGGGAGCAAACAGGATTTCCCATGAGGCCT 2721024 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || |||||||| || ||||||| || | ||||| ||||| || || || | || Sbjct 2721025 TTTAGGGAAAATGGGGCCCCCATTTCCACCATGCTTTCACCAAATATCGCACCAGATCGT 2721084 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 | ||| || | ||| | | | ||| ||||||| ||| || || || || || || || Sbjct 2721085 GTCTTCTCTAGCAAAAGAGCTGGGTAGAACTCCAGAGCATCAATATCACCATACAGTTCC 2721144 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||||| ||| || || | ||||||||| Sbjct 2721145 TCTAGTTCTTTAGCCATCTCTTCTTCTCCTGT 2721176 >seq20662 Length=778419 Score = 118 bits (130), Expect = 2e-21 Identities = 178/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| |||||||| || || | ||||| ||| || ||||| Sbjct 621607 TCACCAATCAGGATGAGACGAGTGGTTTGGAAGATCCTCTCGTCGTCCCAGTCGGGATGC 621666 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| | |||| | ||| || || | |||||| || | ||||| || ||||| |||||| Sbjct 621667 TCTTGCTTCATGATATCACAGACACGGTTGTGCTCACGAAGCCAAATGGTAGCATACATC 621726 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || | ||| || ||||| || || |||| || || ||||| | | | | ||| || Sbjct 621727 ATCAAACCTGGAACCAGACCGAAGACCTCATGGCCCACAGCAAATCTCTGTTCTTCTGGG 621786 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 | | ||||||||| ||| | |||||||||||| || ||| | || ||||||| ||| Sbjct 621787 ATATGAGGAGGATAGTGCATCTCCACCTGGACATCCTTCACCAACGGAGGATACACCTCA 621846 Query 9850 CCGTCAATAATCT 9862 || || | || || Sbjct 621847 CCATCCACAACCT 621859 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | || || || ||||| || ||||||| | || || || | | | Sbjct 620422 CAAATCCCACTTTCCCACCAAATGTGCTCGGCATCCAGTATTCAGGAGAACAAACAGCAT 620481 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||||||| |||||||| || | || || |||| ||| | || |||| || || | Sbjct 620482 TTCCCATGAGACCTTTGAGAGAGTAGGGGGCTCCCATCTCTACCATAGTCTCCCCAAACA 620541 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCCACAGCCTCGATG 8929 |||||||| | ||| || ||||| ||||| || | |||| ||| || || || ||| Sbjct 620542 CAGCGTTGGGTCTGGGTTTCTCCAC-AAGAAGGCCAGGATACAGCTCAACCGCGTCTATG 620600 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTTTA 8980 | ||||| || | | | |||||| || | ||||| |||||||||||| Sbjct 620601 TGACCGTACAGCTGCTTCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTTTA 620651 >seq5998 Length=1230033 Score = 118 bits (130), Expect = 2e-21 Identities = 178/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| |||||||| || || | | ||||| ||| || ||||| Sbjct 827363 TCACCAATCAGGATGAGACGAGTGGTTTGGAAGATTCTCTCGTCGTCCCAGTCGGGATGC 827304 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| | |||| | ||| || || | |||||| || | ||||| || | || |||||| Sbjct 827303 TCTTGCTTCATGATATCACAGACGCGGTTGTGCTCACGAAGCCAAATGGAGGCATACATC 827244 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || | ||| || ||||| || || ||||| || || ||||| | | | | || || Sbjct 827243 ATCAAACCTGGAACCAGACCGAAGGCCTCATGGCCCACAGCAAATCTCTGTTCCTCTGGG 827184 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||||||||| ||| | |||||||||||| || ||| | || ||||||| ||| Sbjct 827183 ACGTGAGGAGGATAGTGCATCTCCACCTGGACATCCTTCACCAATGGAGGATACACCTCA 827124 Query 9850 CCGTCAATAATCT 9862 || || | || || Sbjct 827123 CCATCCACAACCT 827111 Score = 116 bits (128), Expect = 5e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | || || || ||||| || ||||||| | || || || || | | Sbjct 828502 CAAATCCCACTTTCCCACCAAATGTGCTAGGCATCCAGTATTCAGGAGAACAAATAGCAT 828443 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | |||||||||||||||| || | || || |||| ||| | || |||| || || | Sbjct 828442 TTCCCATGAGGCCTTTGAGAGAGTAGGGCGCTCCCATCTCCACCATAGTCTCCCCAAACA 828383 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCCACAGCCTCGATG 8929 |||||||| ||||| || ||||| ||||| || || |||| ||| || || || ||| Sbjct 828382 CAGCGTTGGGTCGGGGTTTCTCCAC-AAGAAGGCCAGTATACAGCTCAACCGCATCTATG 828324 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTTTA 8980 | ||||| || | | | |||||| || | ||||| |||||||||||| Sbjct 828323 TGACCGTACAGCTGCATCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTTTA 828273 >seq19268 Length=1198490 Score = 116 bits (128), Expect = 5e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || ||||| ||||| | |||||||||||||| || || || | ||| |||||||||| Sbjct 414420 CCTATAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTTGGATGTTCT 414361 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 ||||||| | ||| ||||| | |||||| || | ||||| | || ||||||| || Sbjct 414360 TGTTTCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACAAACTG 414301 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACT 9792 ||||| |||| ||| ||||| | ||||| || | ||||| ||| | | || || Sbjct 414300 AGACCCGGCAGCAGTCCAAACACTTCTTGCCCAATGGCCAGCTGCAGCTCTGGCGGGACA 414241 Query 9793 TCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACC 9851 || || ||| |||| | ||| | ||||| || | |||||| || || ||||| Sbjct 414240 GACGGTGGGTAGTTCATTTTGACCGGTGCATCTAGCACTGTGGGGGGGTATATCTCACC 414182 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || || || || ||||| |||||||| | |||||||| || || ||||||||||| Sbjct 434192 CCCCCAAATGTACTGGGCTTCCAGTACTCAGGGGAGCAAATAGGATTTCCCATGAGGCCT 434133 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || |||||||| || ||||||| || | ||||| ||||| || || | || || Sbjct 434132 TTTAGGGAAAATGGGGCCCCCATTTCCACCATGCTTTCACCAAATATCACACCAGGTCGT 434073 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 | ||| || | ||| | | | ||| ||||||| ||| || || | || || || | Sbjct 434072 GTCTTCTCTAGCAAAAGAGCTGGGTAGAACTCCAGAGCATCAATATGACCATACAGTTTC 434013 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||||| ||| || || ||||||||||| Sbjct 434012 TCTAGTTCTTTAGCCATCTCTTTTTCTCCTGT 433981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707765952226080