Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq85036 122 1e-22
seq19301 122 1e-22
seq3398 122 1e-22
seq16819 120 4e-22
seq11759 114 2e-20
seq6006 114 2e-20
seq11199 111 2e-19
>seq85036
Length=2202
Score = 122 bits (134), Expect = 1e-22
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | |||
Sbjct 1123 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 1064
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|||||||| || || || ||||||||||| || ||||| | | ||| ||| |||||||
Sbjct 1063 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 1004
Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGG 63361
|| |||| ||| ||||| | | |||| ||
Sbjct 1003 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 974
>seq19301
Length=1192634
Score = 122 bits (134), Expect = 1e-22
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | |||
Sbjct 386050 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCT 386109
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|||||||| || || |||||||||||||| || ||||| | | ||| ||| |||||||
Sbjct 386110 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 386169
Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGG 63361
|| |||| ||| || || | | |||| ||
Sbjct 386170 GGGCTCCAGGTACATAGCAAAAGCTCCTGG 386199
Score = 102 bits (112), Expect = 1e-16
Identities = 126/170 (74%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| || || || ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 380616 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 380675
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
| | || || || || || ||||||||||| |||||||||||||| |||| ||| ||||
Sbjct 380676 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 380735
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62230
|||| | || ||||| | || ||||| | ||| ||| | || |||||
Sbjct 380736 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 380784
>seq3398
Length=854497
Score = 122 bits (134), Expect = 1e-22
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | |||
Sbjct 22329 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 22270
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|||||||| || || || ||||||||||| || ||||| | | ||| ||| |||||||
Sbjct 22269 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 22210
Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGG 63361
|| |||| ||| ||||| | | |||| ||
Sbjct 22209 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 22180
Score = 107 bits (118), Expect = 2e-18
Identities = 125/169 (74%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| || || || ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 30534 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 30475
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
| | || || || || || ||||||||||| |||||||||||||| |||| ||| ||||
Sbjct 30474 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 30415
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230
|||| | || ||||| | ||| ||||| | | ||| | || |||||
Sbjct 30414 TTTGCGAGATCTCCCACACAGTCTTATACAGTTCCTTCAGGTCATCTGG 30366
>seq16819
Length=1945512
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| |
Sbjct 739164 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 739105
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || || ||||| || || |||||||||||||||||||| || |||||||| |
Sbjct 739104 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 739045
Query 33446 CAATAAGTCTCTCTCC 33461
| | | |||||| ||
Sbjct 739044 CCACCACTCTCTCCCC 739029
Score = 84.2 bits (92), Expect = 3e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||| | ||| || || ||||| ||||| |||||||| || ||||||||||| || ||
Sbjct 738601 ATCTTTGATATAGGTGTCAATCAACAGACTGTACATTTCAGAGTGAATGTTTTCCATTGC 738542
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
||||| || |||||||| || | || ||||| | || || || | |||||| ||
Sbjct 738541 AATCTGGAAACCGTAGAAGCAACGGGCTTCGGTCACTTGGACCTCCTGAGTAAATCGCTC 738482
Query 33684 CGCC 33687
| ||
Sbjct 738481 CACC 738478
>seq11759
Length=1730004
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || ||||| ||||| | |||||||||||||| ||||| | || |
Sbjct 147487 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCT 147546
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| | ||| | |||| ||| ||||||||||| |||||||| ||||||||||| ||||| |
Sbjct 147547 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATG 147606
Query 33446 CAATAAGTCTCTCTCC 33461
| | | || ||||||
Sbjct 147607 CTACTAATCGCTCTCC 147622
>seq6006
Length=139621
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| |
Sbjct 86163 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86222
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || || ||||| || || || ||||||||||||||||| || |||||||| |
Sbjct 86223 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 86282
Query 33446 CAATAAGTCTCTCTCC 33461
| | | |||||| ||
Sbjct 86283 CCACCACTCTCTCCCC 86298
>seq11199
Length=1679328
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || ||||| ||||| | |||||||||||||| ||||| | || |
Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| | ||| | |||| ||| ||||||||||| |||||||| ||||| ||||| ||||| |
Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 643635
Query 33446 CAATAAGTCTCTCTCC 33461
| | | || ||||||
Sbjct 643634 CTACTAATCGCTCTCC 643619
Score = 86.0 bits (94), Expect = 8e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 33796 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATG 33855
|||| || || || |||||||| ||||| |||| || | ||| ||||| |||||||||
Sbjct 641027 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 640968
Query 33856 TCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897
||| ||| || || |||||||| ||||||| ||||| |||
Sbjct 640967 TCAGGATACTGAATAGGGAAAATGACAAATCGTTTTGGGTTT 640926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622280007975120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |