Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq13143 107 2e-18 seq46 107 2e-18 seq1581 102 7e-17 seq20611 96.9 3e-15 >seq13143 Length=1991197 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | |||||| ||||||||||| || ||||||||||||| | Sbjct 1626614 CCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1626555 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | || |||||| || | || ||||| || | || || ||||| ||||| Sbjct 1626554 AGCGT----GCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 1626499 Query 16825 AGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882 ||| | ||| || ||||| || || || |||||| | | | ||||||| |||| Sbjct 1626498 AGGAATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGCTGGGC 1626441 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | ||||||||| || || ||||| ||||| ||||| |||||||| Sbjct 1626440 TCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1626388 >seq46 Length=2207375 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || ||| |||||| Sbjct 2030765 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTCC 2030710 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| || ||||| || | || || ||||| ||||| ||| | ||| || || Sbjct 2030709 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 2030650 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || ||| ||||| | | | ||||||| |||||| || | |||| Sbjct 2030649 GTCTTGGATTTTAGCT--TTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTG 2030592 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 ||||| || || |||||||| || ||||| |||||||| || Sbjct 2030591 ATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 2030551 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/218 (71%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || ||| |||||| Sbjct 2030993 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTCC 2030938 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| || ||||| || | || || ||||| ||||| ||| | ||| || || Sbjct 2030937 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 2030878 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 || || || || ||| || | | | ||||||| |||||| || | |||| Sbjct 2030877 ATCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTG 2030820 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || |||||||| ||||| || |||||||| Sbjct 2030819 ATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2030782 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| | || ||| | ||| Sbjct 2031654 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCC 2031595 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || || ||| | ||| || ||||| Sbjct 2031594 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 2031535 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| | |||||| ||||| ||||||| Sbjct 2031534 TGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGG 2031477 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||||||| ||||| || |||||||| Sbjct 2031476 TCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2031443 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || ||||||||||| || ||||||||||||| | Sbjct 2031897 CCGCCACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2031838 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| |||| || || || || | || || ||||| ||||| Sbjct 2031837 AGGGT----GCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGG 2031782 Query 16825 AGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882 ||| | ||| || ||||| || || ||| || || | | | ||||||| |||| Sbjct 2031781 AGGAATGCCTTCCTTGTCTTGGATTTTAGCT--TTGACATTCTCAATGGTGTCGCTGGGC 2031724 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | ||||||||| || || |||| || || || || |||||||| Sbjct 2031723 TCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 12/208 (6%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || ||| |||||| Sbjct 2031426 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTCC 2031371 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| || || || ||| | || || ||||| ||||| ||| | ||| || || Sbjct 2031370 ATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 2031311 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || || ||| || | | | ||||||| |||||| || | |||| Sbjct 2031310 GTCCTGGATCTTGGC--CTTGACGTTCTCTATGGTGTCGCTGGGCTCAACCTCGAGGGTG 2031253 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAA 16925 |||||||| || |||| || || |||| Sbjct 2031252 ATGGTTTTACCAGTCAAGGTCTTCACAA 2031225 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || |||||||| || || ||||||||||||| || || ||||| Sbjct 2031222 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGT----GCGTC 2031167 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | ||||| |||||||| || | || | ||||| ||||| ||| | ||| || | Sbjct 2031166 CATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCT 2031107 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 | || || || || ||| || | | | ||||||| |||||| || | ||| Sbjct 2031106 TATCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGT 2031049 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || |||| || || || || |||||||| Sbjct 2031048 GATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031010 >seq1581 Length=2594311 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| ||||| |||||||| || || ||||||||||| | | Sbjct 1373171 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1373230 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || |||| |||||||| || | || |||| ||| ||||| || Sbjct 1373231 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1373290 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || ||||| ||| || | | | ||||||| ||||| Sbjct 1373291 ATGCCTTCTTTGTCCTGGATCTTTGC--CTTGACGTTCTCAATGGTGTCGCTTGGCTCGA 1373348 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || ||||||||||| |||||||| Sbjct 1373349 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1373397 >seq20611 Length=922441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| || | ||||| |||||||| || || ||||||||||| | | Sbjct 520545 CCTCCCCTGAGACGCAGCACAAGATGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 520604 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||||| ||| | || | || ||| ||||| || Sbjct 520605 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 520664 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | ||||||| ||||| Sbjct 520665 ATGCCTTCTTTGTCCTGGATCTTAGC--CTTGACGTTCTCAATTGTGTCGCTTGGCTCAA 520722 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || ||||||||||| |||||||| Sbjct 520723 CCTCAAGGGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 520771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404664987109180