Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4387 127 1e-24 seq14590 118 7e-22 seq20726 113 3e-20 seq3375 107 1e-18 seq46 98.7 7e-16 seq20724 95.1 8e-15 seq9601 95.1 8e-15 seq20611 91.5 1e-13 seq13143 91.5 1e-13 seq3400 91.5 1e-13 seq9779 86.0 4e-12 >seq4387 Length=3233148 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct 1175612 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGGTAGGGACAGTGGGAATCTCGT 1175671 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1175672 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1175706 >seq14590 Length=5833377 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| |||||||||||||||||||||| | || ||||| || |||||||| Sbjct 2339274 AAGCCCGTTCTCTTGGCTGTGGTTTCGCTAGATCGCAGGTAGGGACAGTGGGAATCTCGT 2339333 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2339334 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2339368 Score = 114 bits (126), Expect = 9e-21 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| |||||||||||||||||||||| | || ||||| || |||||||| Sbjct 2339910 AAGCCCGTTCTCTTGGCTGTGGTTTCGCTAGATCGCAGGTAGGGACAGTGGGAATCTCGT 2339969 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||||||||||||||||||||| Sbjct 2339970 TCATCCATTCATGCGCGTCACTAATTAGATGAC 2340002 >seq20726 Length=1727696 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 233765 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTGACTATCGGTCTCGT 233824 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 233825 GCCAGTATTTAGCCTTA 233841 >seq3375 Length=89888 Score = 107 bits (118), Expect = 1e-18 Identities = 80/94 (85%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||| |||||||||||||||||| || ||||| || |||||||| Sbjct 72416 AAGCCTGTTCCCTTGGATGTGGTTTCGCTAGATAGCAGGTAGGGACAGTGGGAATCTCGT 72475 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| |||||| | |||||||||||||||||| Sbjct 72476 TCATCCATTCATGTGAGTCACTAATTAGATGACG 72509 >seq46 Length=2207375 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||| | ||||| || |||||| |||||| || || ||||| |||| Sbjct 2031671 TACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 2031612 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || || || || || || || || || ||||| | | Sbjct 2031611 ACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAG 2031552 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| || || ||| || |||| | || || | |||| Sbjct 2031551 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 2031492 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || |||| || || ||||| |||||||| Sbjct 2031491 CTTCCAAAGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2031443 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||| | ||||| || |||||| |||||| || || ||||| || | Sbjct 2031443 TACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2031384 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || || || ||||| || || || || || || | | Sbjct 2031383 ACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAG 2031324 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| || || ||| || |||| | || || | |||| Sbjct 2031323 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCTATGGTGTCGCTGGGCTCAA 2031264 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || | || || |||||||| |||||||| ||||| Sbjct 2031263 CCTCGAGGGTGATGGTTTTACCAGTCAAGGTCTTCAC 2031227 >seq20724 Length=3546869 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || ||||| || || || | || |||||||| ||||||||| ||| || || Sbjct 2005640 CCAACTAAGTATTTTGGCTGTGAGTTGGGGGCTCAGACTCAGTTTGATGCCAAGAATGAC 2005581 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || |||||||| ||| | | ||| ||||||||| | || || || || Sbjct 2005580 CGCTACATTGTAAACGGATCCCATGAAGCCAACAAACTGCAGGACATGCTGGATGGATTC 2005521 Query 6441 ATTCGCAAGTTTGTGCTGTG 6460 || | ||||||||||||||| Sbjct 2005520 ATCCACAAGTTTGTGCTGTG 2005501 >seq9601 Length=1517688 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || ||||| || || || | || |||||||| ||||||||| || || || Sbjct 1509079 CCAACTAAGTATTTTGGCTGTGAGTTGGGGGCTCAGACTCAGTTTGATGCTAAGAATGAC 1509138 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| |||||||| ||| | | ||| ||||||||| | || || || || Sbjct 1509139 CGCTACATCGTAAACGGATCCCATGAAGCCAACAAACTGCAGGACATGCTGGATGGATTC 1509198 Query 6441 ATTCGCAAGTTTGTGCTGTG 6460 || | ||||||||||||||| Sbjct 1509199 ATCCACAAGTTTGTGCTGTG 1509218 >seq20611 Length=922441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || || | ||||||||||| ||| | ||| ||| ||||| || ||||| ||||| Sbjct 520316 ACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGA 520375 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| || | || || | ||||| |||||||| || | | || || || | ||| Sbjct 520376 CAATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 520435 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TC 38266 | |||||||| ||| || || ||| || |||| | || | ||||| || Sbjct 520436 AATACCTTCTTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGT---CACTTGGCTC 520492 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| || | || || || || || |||||||| || ||||| ||||||||| Sbjct 520493 AACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 520544 >seq13143 Length=1991197 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| || | ||| || ||| ||||| || || |||||||||| Sbjct 1624822 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAG 1624763 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || || || || || ||||| || || || || || || | | Sbjct 1624762 ACAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAG 1624703 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| ||||| ||||| || || |||| | || || | |||| Sbjct 1624702 GGATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAA 1624643 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || | || || || || || |||| || || ||||| |||||||| ||| Sbjct 1624642 CCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATCTTT 1624590 >seq3400 Length=902154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377 || || || |||| || || || || | || || || || ||||| ||| ||| || Sbjct 242369 TATCCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAAACCCAGTTCGATAGCAAGAAT 242310 Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437 || |||| |||||| || ||||| ||| | | ||| ||||| ||| | || || || Sbjct 242309 GACCGCTACATCGTCAATGGATCTCATGAAGCAAACAAACTGCAAGACATGCTAGATGGA 242250 Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 || |||||||||||||||||||||| || || || || || || || || Sbjct 242249 TTCATTCGCAAGTTTGTGCTGTGTCCTGAGTGTGACAATCCTGAAACTGA 242200 >seq9779 Length=2398276 Score = 86.0 bits (94), Expect = 4e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| || || || || | || || || || ||||||||| ||| || || Sbjct 1794580 CCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAAACCCAGTTTGATACCAAGAATGAC 1794521 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| || ||||| ||| | | ||| ||||| ||| | || || || || Sbjct 1794520 CGCTACATCGTCAATGGATCTCATGAGGCAAACAAACTGCAAGACATGCTAGATGGATTC 1794461 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||| |||||||||||||||| || || || || || || || || Sbjct 1794460 ATTCATAAGTTTGTGCTGTGTCCTGAGTGTGACAATCCTGAAACTGA 1794414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334597431595742