Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq13143 125 6e-24 seq46 118 9e-22 seq20611 105 6e-18 seq77944 89.7 4e-13 seq3398 89.7 4e-13 >seq13143 Length=1991197 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| || || || || || | || || || || |||| || || || || Sbjct 1624588 GTAAAGATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAG 1624647 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| ||| ||| | || | ||||| ||||| ||||||||||| || || || || Sbjct 1624648 CCCAGCGACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCT 1624707 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || ||||| || ||||| ||||| ||||| || ||| ||||| | || ||| Sbjct 1624708 GACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGAT 1624767 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || ||||||||| | ||| | || |||| || | || ||| Sbjct 1624768 TACAACATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGGT 1624821 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| ||||| ||||||||||| || || || || || || || ||||| || |||| Sbjct 1625461 TCAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCGTCTGATCTTTG 1625520 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 | ||||| ||||| || ||| ||||| | || ||||||||||| || || ||||||| Sbjct 1625521 CTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTACAACATCCAGAAGGAATCCA 1625580 Query 22415 CCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || | ||| | || |||| || | || ||| Sbjct 1625581 CCCTCCATCTTGTCCTGCGTCTGAGAGGTGGT 1625612 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||| ||||| || ||||| || || || || ||| | || || ||||||||| Sbjct 1626244 AAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTCGCCGGCAAA 1626303 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| || ||| ||||| | ||||| |||||||| || ||||| |||||| | ||| Sbjct 1626304 CAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCAT 1626363 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| || | || ||| Sbjct 1626364 CTTGTCCTGCGTCTGAGAGGTGGT 1626387 >seq46 Length=2207375 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| || ||||| || || | || || || || |||| || || || || Sbjct 2030548 GTAAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAG 2030607 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| ||| ||| | || || | ||| ||||| ||||||||||| || ||||| || Sbjct 2030608 CCCAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCT 2030667 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || ||||| || || || ||||| ||| | || ||| |||||| | ||||| Sbjct 2030668 GACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGAC 2030727 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || || || ||||| Sbjct 2030728 TACAACATCCAGAAGGAGTCCAC 2030750 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || || || ||| | Sbjct 2031671 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2031730 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| ||||| ||||||||||| || ||||| || || || Sbjct 2031731 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 2031790 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | || ||| |||||| | ||||| |||||| Sbjct 2031791 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 2031850 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || |||||| | ||| | || |||| Sbjct 2031851 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCG 2031885 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || || || ||| | Sbjct 2031010 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2031069 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || || ||||| || ||||| || || || Sbjct 2031070 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 2031129 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||||||||| || ||| ||||| | ||||| |||||| Sbjct 2031130 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 2031189 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||| |||||| | ||| | || |||| Sbjct 2031190 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCG 2031224 >seq20611 Length=922441 Score = 105 bits (116), Expect = 6e-18 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 22201 TTTTATACATTTGT--AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA 22258 |||| | ||||||| | ||||||| || ||||| ||||| | || ||||| || ||| Sbjct 520791 TTTTCTTCATTTGTTTATAGATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCA 520732 Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318 | ||||| || || | | ||| || | || | |||| || || || ||||| | Sbjct 520731 CCCTTGAGGTTGAGCCAAGCGACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAG 520672 Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378 | || ||||| || || || || | | || ||||||||||||||| | || ||| || Sbjct 520671 AAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCC 520612 Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||| | || || |||||||| || ||||| ||||| | ||| | || |||| Sbjct 520611 GCACATTGTCTGACTACAACATCCAGAAAGAGTCCACTTTGCATCTTGTGCTGCG 520557 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| ||||| || || | | Sbjct 520543 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 520484 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || || || || |||||||| || || || Sbjct 520483 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAAGAAGGTATTCCCCCTGACCAG 520424 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| ||||| | || || |||||| Sbjct 520423 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGTCGCACATTGTCTGACTACAAC 520364 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || |||||||| |||||| | ||| | || ||||| | | ||||||| Sbjct 520363 ATCCAAAAAGAGTCCACCTTGCATCTGGTGTTGCGTCTCAGGGGAGGTT 520315 >seq77944 Length=846 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 ||||||| |||||||| | |||||| ||||| |||||||||||||| | || || | Sbjct 134 TGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGT 75 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 | ||||| |||||| ||||| ||||| | |||||| || ||||| || || Sbjct 74 TGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 23 >seq3398 Length=854497 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 ||||||| |||||||| | |||||| ||||| |||||||||||||| | || || | Sbjct 23543 TGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGT 23484 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 | ||||| |||||| ||||| ||||| | |||||| || ||||| || || Sbjct 23483 TGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 23432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419289699298330