Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1581 176 8e-39
seq13143 168 1e-36
seq46 168 1e-36
seq20611 161 2e-34
>seq1581
Length=2594311
Score = 176 bits (194), Expect = 8e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | || |||| |||| || | ||||||||||| |||||||| || || ||
Sbjct 1373171 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1373230
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | |||||||| | ||| || || ||||| || || || || ||||| || |||
Sbjct 1373231 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1373290
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||| ||||| || ||||||||||||||| ||| |||||||| || || ||
Sbjct 1373291 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACC 1373350
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || |||||||| ||||| || ||||||||
Sbjct 1373351 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1373397
>seq13143
Length=1991197
Score = 168 bits (186), Expect = 1e-36
Identities = 180/235 (77%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287
|||||| || || ||||| |||| || | || || |||||||| || |||||||| ||
Sbjct 1626621 TTAATTGCCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTA 1626562
Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347
||||| || || | |||||||| | |||||| || ||||| || || | || |||||
Sbjct 1626561 GTCGGACAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 1626502
Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406
|| ||||||||||||||||| || ||||| ||||| ||| ||| |||||||| ||| |
Sbjct 1626501 AGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGG 1626443
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || | ||||||||| || || || ||||| || || || ||||||||
Sbjct 1626442 GCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1626388
Score = 154 bits (170), Expect = 3e-32
Identities = 162/209 (78%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| || || |||||||| ||||| || || || | |||||||| |
Sbjct 1624801 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCCA 1624742
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
||||||| || || || || || | || ||||| || || ||||||||||||||||| |
Sbjct 1624741 ACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGA 1624682
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTT 68432
| || || |||||| ||| |||||||| |||| || || || | ||||||||| ||
Sbjct 1624681 TTTTAGCTTTGACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCGAGGGTGATGGTCTTG 1624623
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || ||||||||||| ||||||||
Sbjct 1624622 CCAGTCAGCGTCTTGACGAAGATCTGCAT 1624594
Score = 118 bits (130), Expect = 2e-21
Identities = 106/132 (80%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||||||||| |||||||| || ||||| || || | |||||||| |
Sbjct 1626367 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCA 1626308
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||| || |||||||| || | | || ||||| || |||||||||||||| ||||| |
Sbjct 1626307 ACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGA 1626248
Query 68374 TCTTTGCCTTGA 68385
|||| |||||||
Sbjct 1626247 TCTTGGCCTTGA 1626236
Score = 111 bits (122), Expect = 3e-19
Identities = 113/146 (77%), Gaps = 1/146 (1%)
Strand=Plus/Minus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| || || |||||||| ||||| || || || | |||||||| |
Sbjct 1625592 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCCA 1625533
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
||||||| || || || || || | || ||||| || || ||||||||||||||||| |
Sbjct 1625532 ACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGA 1625473
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTG 68399
| || || |||||| ||| ||||||
Sbjct 1625472 TTTTAGCTTTGACGTTCTCAATGGTG 1625447
Score = 104 bits (114), Expect = 4e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | || ||||| || |||||||||||||||||||| || || ||
Sbjct 1625752 CCAGCTAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCT 1625693
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|||||| ||| |||||||| | || || || | ||||||||| || || || ||
Sbjct 1625692 TTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGT 1625633
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||||||||| ||||||||
Sbjct 1625632 GTCTTGACGAAGATCTGCAT 1625613
>seq46
Length=2207375
Score = 168 bits (186), Expect = 1e-36
Identities = 165/210 (79%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || |||||||| || |||||||| || ||||| || || | ||||||||
Sbjct 2030990 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 2030931
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || ||||| || || | || ||||| || |||||||||||||| || ||
Sbjct 2030930 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGG 2030871
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTT 68431
||||| ||||||||| ||| |||||||| |||| || || || | ||||||||| ||
Sbjct 2030870 ATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCGAGGGTGATGGTCTT 2030812
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || ||||||||||| ||||||||
Sbjct 2030811 GCCAGTCAGCGTCTTGACGAAGATCTGCAT 2030782
Score = 168 bits (186), Expect = 1e-36
Identities = 180/235 (77%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287
|||||| || || ||||| |||| || | || || |||||||| || |||||||| ||
Sbjct 2031904 TTAATTGCCGCCACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTA 2031845
Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347
||||| || || | |||||||| | |||||| || ||||| || || | || |||||
Sbjct 2031844 GTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTC 2031785
Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406
|| |||||||||||||||||||| || || || ||||| ||| |||||||| ||| |
Sbjct 2031784 AGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTC-GCTGG 2031726
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || | ||||||||| || || || | |||||| ||||| ||||||||
Sbjct 2031725 GCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031671
Score = 165 bits (182), Expect = 1e-35
Identities = 162/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || |||||||| || |||||||| || || || || || | ||||| ||
Sbjct 2031651 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCCTCC 2031592
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || ||||| || || | || || || || ||||||||||||||||| ||
Sbjct 2031591 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 2031532
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||||||| ||| |||||||| | || |||||||| |||||||| ||
Sbjct 2031531 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTCTTG 2031472
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || ||||||||||| ||||||||
Sbjct 2031471 CCAGTCAGCGTCTTGACGAAGATCTGCAT 2031443
Score = 163 bits (180), Expect = 5e-35
Identities = 164/209 (78%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||||||||| |||||||| || ||||| || || | |||||||| |
Sbjct 2031217 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCA 2031158
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||| || |||||||| || | | || ||||| || |||||||||||||| || || |
Sbjct 2031157 ACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGA 2031098
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432
|||| ||||||||| ||| |||||||| ||| | || || || | ||||||||| ||
Sbjct 2031097 TCTTGGCCTTGACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCGAGGGTGATGGTCTTG 2031039
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || | |||||| ||||| ||||||||
Sbjct 2031038 CCAGTCAAGGTCTTCACGAAGATCTGCAT 2031010
Score = 156 bits (172), Expect = 8e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | ||||| | |||| ||| || |||||||| || |||||||| || |||||
Sbjct 2030780 CCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2030721
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| || ||||| || || | || ||||| || |||
Sbjct 2030720 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 2030661
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
||||||||||||||||| || || || || || ||| |||||||| ||| | || ||
Sbjct 2030660 ATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTC-GCTGGGCTCAAC 2030602
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || || || ||||| || || ||||||||
Sbjct 2030601 CTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 2030554
Score = 152 bits (168), Expect = 9e-32
Identities = 154/198 (78%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || |||||||| || |||||||| || ||||| || || | ||||||||
Sbjct 2031423 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 2031364
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || || || || || | || ||||| || ||||||||||||||||| ||
Sbjct 2031363 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 2031304
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTT 68431
||||| ||||||||| ||| |||||||| |||| || || || | ||||||||||||
Sbjct 2031303 ATCTTGGCCTTGACGTTCTCTATGGTGTC-GCTGGGCTCAACCTCGAGGGTGATGGTTTT 2031245
Query 68432 TCCCGTGAGGGTCTTGAC 68449
|| || | |||||| ||
Sbjct 2031244 ACCAGTCAAGGTCTTCAC 2031227
>seq20611
Length=922441
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | || ||||| |||| || | |||||||||||||||||||| || || ||
Sbjct 520317 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 520376
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | |||||||| | ||| || ||||| || || | || || ||||| || |||
Sbjct 520377 AATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 520436
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| || || || ||||| ||||||||| ||| |||||||| || || ||
Sbjct 520437 ATACCTTCTTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACC 520496
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || || | |||||||||||| ||||||||
Sbjct 520497 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 520543
Score = 152 bits (168), Expect = 9e-32
Identities = 152/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324
||||||||||| |||||||| || || || | ||| | |||||||| | ||| || |||
Sbjct 520575 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCG 520634
Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384
|| || || | || || ||||| || ||||||||||| ||||| || ||||| ||||||
Sbjct 520635 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTG 520694
Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444
||| ||| || ||||| || || || || | ||||||||| || || ||||||||
Sbjct 520695 ACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTT 520754
Query 68445 TTGACGAATATCTGCAT 68461
||||| || ||||||||
Sbjct 520755 TTGACAAAGATCTGCAT 520771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 920635319369040
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