Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1581 107 2e-18 seq46 93.3 4e-14 seq20611 82.4 7e-11 seq13143 82.4 7e-11 >seq1581 Length=2594311 Score = 107 bits (118), Expect = 2e-18 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | || ||| ||||||| || || || || ||||| || || || | Sbjct 1373171 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA--G 1373228 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || || | || ||| |||| ||||| || ||| | |||| | |||||||| || | Sbjct 1373229 ACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGG 1373288 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 ||||||||||||| || || || ||| |||| || | || | ||||||| | |||| Sbjct 1373289 GAATGCCTTCTTTGTCCTGGATCTTTGCCTTGA-CGTTCTCAATGGTGTCGCTTGGCTCG 1373347 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| || || ||||| ||||| || |||||| Sbjct 1373348 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATC 1373398 >seq46 Length=2207375 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | ||| || || || || || ||||| ||||| || || ||| Sbjct 2030783 ATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 2030724 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || || || ||| | |||| || |||||||| || Sbjct 2030723 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGA 2030664 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || ||||| ||||| ||| | || | ||||||| | ||| Sbjct 2030663 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCA 2030604 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || ||||| || || || || ||||| || |||||| Sbjct 2030603 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATC 2030553 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || ||||| || || || || || ||||| || || ||| ||| | | | ||| | Sbjct 2031218 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG--GACAGAGTGCGTCCATCTT 2031161 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 |||| ||||| || ||| | ||||| || |||||||| || ||||||||||| ||||| | Sbjct 2031160 CCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCT 2031101 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 | || || |||| || | || | ||||||| | ||| || ||||| || | || Sbjct 2031100 GGATCTTGGCCTTGA-CGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 2031042 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || || || || || ||||| Sbjct 2031041 TTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031010 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || ||||| || || || ||||| ||||| || || ||| Sbjct 2031897 CCGCCACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2031838 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || ||| | |||| || |||||||| || ||| Sbjct 2031837 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 2031778 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||| ||||| ||||| || | ||||||| | ||| || Sbjct 2031777 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 2031718 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || | || || || || || ||||| Sbjct 2031717 TCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031671 >seq20611 Length=922441 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | |||||| ||||||| || || || |||||||| || || || | Sbjct 520317 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCA--G 520374 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | || ||| |||| ||||| || || | ||||| | |||||||| || | Sbjct 520375 ACAATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGG 520434 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 |||| ||||||||||| || || || |||| || | || | |||||| | ||| Sbjct 520435 GAATACCTTCTTTATCCTGGATCTTAGCCTTGA-CGTTCTCAATGGTGTCACTTGGCTCA 520493 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || | || || || || || ||||| Sbjct 520494 ACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 520543 >seq13143 Length=1991197 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || |||||||| || || ||||| ||||| || || ||| | Sbjct 1626614 CCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG--G 1626557 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| || | || || || ||| | |||| || |||||||| || | Sbjct 1626556 ACAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAG 1626497 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 |||||||||| || || || || || || | || | || | ||||||| | ||| Sbjct 1626496 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCGCTGGGCTCA 1626438 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || || ||||| ||||| || ||||| Sbjct 1626437 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1626388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451519093272720