Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq20662 116 5e-21 seq5998 113 7e-20 seq9107 107 3e-18 seq9617 104 3e-17 seq7720 98.7 1e-15 seq19268 96.9 5e-15 >seq20662 Length=778419 Score = 116 bits (128), Expect = 5e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| |||||||||||||| || | | |||||| |||| || || || || || || | Sbjct 621618 GATGAGACGAGTGGTTTGGAAGATCCTCTCGTCGTCCCAGTCGGGATGCTCTTGCTTCAT 621677 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | ||| ||||| | |||||| || | ||||| ||||| || |||||||| ||||| || Sbjct 621678 GATATCACAGACACGGTTGTGCTCACGAAGCCAAATGGTAGCATACATCATCAAACCTGG 621737 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | ||| || || |||| ||||| ||||| | | | || || || | | || | Sbjct 621738 AACCAGACCGAAGACCTCATGGCCCACAGCAAATCTCTGTTCTTCTGGGATATGAGGAGG 621797 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 ||| |||| | ||||||| || || || || ||||||| ||||| || | ||| Sbjct 621798 ATAGTGCATCTCCACCTGGACATCCTTCACCAACGGAGGATACACCTCACCATCCACAAC 621857 Query 9966 CT 9967 || Sbjct 621858 CT 621859 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 |||| | ||||||| ||||| |||||| | || || || ||||| |||| || || | Sbjct 621353 GAAAGTTGTCAGGCATCAGAGGGTGCCAGTGATACAGAGTGTTGAATTCGGATGCGATGC 621412 Query 9605 GGTTCTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAG 9663 |||||||||||||||| ||| | | ||| || | ||| |||||||| | |||| |||| Sbjct 621413 GGTTCTGGTACTGAAA-GCGCTCATTGAAGAGAAGCTCTGGGTCAAACTTGAGCTTGAAG 621471 Query 9664 TGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| || || | ||||| ||||| Sbjct 621472 TGGTAGCCACTCAAGTGCTGAACATA 621497 >seq5998 Length=1230033 Score = 113 bits (124), Expect = 7e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| |||||||||||||| || | |||||| |||| || || || || || || | Sbjct 827352 GATGAGACGAGTGGTTTGGAAGATTCTCTCGTCGTCCCAGTCGGGATGCTCTTGCTTCAT 827293 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | ||| ||||| | |||||| || | ||||| |||| ||| |||||||| ||||| || Sbjct 827292 GATATCACAGACGCGGTTGTGCTCACGAAGCCAAATGGAGGCATACATCATCAAACCTGG 827233 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | ||| || | |||| ||||| ||||| | | | || || || || | || | Sbjct 827232 AACCAGACCGAAGGCCTCATGGCCCACAGCAAATCTCTGTTCCTCTGGGACGTGAGGAGG 827173 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 ||| |||| | ||||||| || || || || ||||||| ||||| || | ||| Sbjct 827172 ATAGTGCATCTCCACCTGGACATCCTTCACCAATGGAGGATACACCTCACCATCCACAAC 827113 Query 9966 CT 9967 || Sbjct 827112 CT 827111 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 |||| | ||||||| ||| | |||||| | || || || ||||| |||| || || | Sbjct 827621 GAAAGTTGTCAGGCATCAGCGGGTGCCAGTGATACAGAGTGTTGAATTCGGATGCGATGC 827562 Query 9605 GGTTCTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAG 9663 ||||||||||||| ||| || | || ||| || | |||||||||||| | |||| |||| Sbjct 827561 GGTTCTGGTACTGGAAG-CGCTCACTGAAGAGAAGCTCCGGGTCAAACTTGAGCTTGAAG 827503 Query 9664 TGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| || || | ||||| ||||| Sbjct 827502 TGGTAGCCACTCAAGTGCTGAACATA 827477 >seq9107 Length=1685290 Score = 107 bits (118), Expect = 3e-18 Identities = 172/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 ||| ||| || || | ||| ||||||| | ||||||| |||| || || || || || | Sbjct 1327937 TAAGGATGAGCCGTGCGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGCTCCTGCT 1327878 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | ||| || || | ||||||||| | ||||||||||||||| |||||||| | | Sbjct 1327877 TTAGTATATCACACACTCGGTTGTGTTCACGCAGCCATATGGTGGCATACATCATGAGTC 1327818 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGG 9901 | || || | ||||| |||| | || || |||||||| | || || || | | Sbjct 1327817 CGGGAACCAGTCCAAAGGCTTCGTGACCAACGGCAAAGCGACGGGACTCAGGTACATGAG 1327758 Query 9902 GCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAA 9961 | | || |||| | || || ||| |||| || || ||||| | ||||| || | Sbjct 1327757 GAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGATAAACCTCACCATCCA 1327698 Query 9962 TAACCTG 9968 |||||| Sbjct 1327697 GAACCTG 1327691 Score = 89.7 bits (98), Expect = 7e-13 Identities = 166/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || || || || || || | || || ||||| || |||||||||||| | Sbjct 1329093 GCAGTATTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTACTTGGTTTCCAGTACTCG 1329034 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| || |||| || ||||| | ||| | || || |||| || | Sbjct 1329033 GGGGAACAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 1328974 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || ||||||| || | || || || || | | |||| || || Sbjct 1328973 ATGGTCTCCCCAAAGATGGTGTTGGTCCTGGGCTTCTCAACCAGCAGCCCAGCATAAAGC 1328914 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || || || || | |||| | || ||||| |||||||| || ||| Sbjct 1328913 TCCACAGCATCCACATCCCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 1328854 Query 9176 ACAA 9179 | || Sbjct 1328853 AAAA 1328850 >seq9617 Length=2863312 Score = 104 bits (114), Expect = 3e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 |||| || || | ||||| ||||||| |||||| || ||||| || ||||| |||| Sbjct 2728183 TAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTAGGATGTTCTTGTT 2728242 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | ||| || || | |||||| || | |||||| | |||||||||||| | | || Sbjct 2728243 TCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTGAGAC 2728302 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGC-GCAGATCATCGGGCACTTCG 9900 |||||| | ||||||||||| || |||| || ||| || | || || || Sbjct 2728303 CCGGCAGCAGGCCAAACACTTC-TTGCCCAATGGCCAGCTGCTGCTCCGGTGGGACAGAC 2728361 Query 9901 GGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACC 9956 |||| || ||| | ||| | | ||| || |||||||||||||| ||||| Sbjct 2728362 GGCGGGTAGCTCATTTTGACCGGTGCATCTAGTACTGTGGGGGGATACATCTCACC 2728417 >seq7720 Length=2841229 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || || || || || || | || || || ||||| |||||||||||| | Sbjct 1872933 GCAGTGTTGACAATCTCAAAGCCCACTTTGCCACCAAAAGTGCTCGGTTTCCAGTACTCA 1872992 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| || |||| || ||||| | ||| | || || |||| || | Sbjct 1872993 GGGGAACAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 1873052 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || |||||||| || | || || || || | |||||||| || | Sbjct 1873053 ATGGTCTCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAAGCCAGTATAAAAC 1873112 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || | || || | |||| | || ||||| |||||||| || ||| Sbjct 1873113 TCCACAGCATCCACATGCCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 1873172 Query 9176 ACAA 9179 | || Sbjct 1873173 AAAA 1873176 Score = 86.0 bits (94), Expect = 9e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 |||| |||||||||| || | ||||||| |||| || || |||||||| | | || | Sbjct 1873714 GAAATTCATCAGGCATAAGGGGATGCCAGTGGTAAAGAGTGTTGAACTCAGAAGAGATCC 1873773 Query 9605 GGTTCTGGTACT-GAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAG 9663 ||||||||||| |||| || | ||| || | || || ||||| | |||| ||| Sbjct 1873774 TGTTCTGGTACTGGAAATGC-TCATTGAAGAGAAGTTCAGGATCAAACTTGAGCTTAAAG 1873832 Query 9664 TGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| |||||||| || || ||||| Sbjct 1873833 TGGTATCCGCTGAGATGTTGCACATA 1873858 >seq19268 Length=1198490 Score = 96.9 bits (106), Expect = 5e-15 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 |||| || || | ||||| ||||||| |||||| || ||||| || ||||| |||| Sbjct 414416 TAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTTGGATGTTCTTGTT 414357 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | ||| || || | |||||| || | |||||| | ||||||||||| | | || Sbjct 414356 TCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACAAACTGAGAC 414297 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTG 9874 |||||| | ||||||||||| || |||| || Sbjct 414296 CCGGCAGCAGTCCAAACACTTC-TTGCCCAATG 414265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722952869218800