Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq77944 93.3 5e-14 seq3398 93.3 5e-14 seq19301 91.5 2e-13 seq11199 84.2 3e-11 >seq77944 Length=846 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||||||| |||||||||| |||||| || ||||| || | ||||||||||| Sbjct 148 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 89 Query 116520 CAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCC 116578 || ||||| || || | |||| | || || ||||||||||| ||||| || || || | Sbjct 88 CAGGTTCTGCTGGTT-GCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGC 30 Query 116579 CCGTCTCCGTTTGGGACT 116596 | ||||| || || |||| Sbjct 29 CGGTCTCTGTCTGAGACT 12 >seq3398 Length=854497 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||||||| |||||||||| |||||| || ||||| || | ||||||||||| Sbjct 23557 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 23498 Query 116520 CAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCC 116578 || ||||| || || | |||| | || || ||||||||||| ||||| || || || | Sbjct 23497 CAGGTTCTGCTGGTT-GCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGC 23439 Query 116579 CCGTCTCCGTTTGGGACT 116596 | ||||| || || |||| Sbjct 23438 CGGTCTCTGTCTGAGACT 23421 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | || || ||||| | |||||||||| |||| ||| || || |||||| Sbjct 30036 TAGATGTTGCTAGTATACGGCTCGATTGACTCATTGTTGCCCAGGATCTGAGCAGTGGAG 29977 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 || ||||||||||| |||| || || ||||| || Sbjct 29976 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTACG 29942 >seq19301 Length=1192634 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||||||||| |||||||||| |||| ||| || || |||||| Sbjct 381083 TAGATGTTGCTAGTGTATGGCTCAATTGACTCATTGTTTCCCAGGATCTGAGCAGTGGAG 381142 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 || |||||||| || |||| || || ||||| || Sbjct 381143 GCAGTGGGCATAGGAGCCAGCAGCAGACTGTTACG 381177 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||||||| |||||||||| ||| || || ||||| || | || |||||||| Sbjct 383136 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 383195 Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579 || ||||| || || ||| ||| || ||||||||||||||||| || || || || Sbjct 383196 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 383255 Query 116580 CGTCTCCGTTTGGGACT 116596 ||||| || || |||| Sbjct 383256 GGTCTCTGTCTGAGACT 383272 >seq11199 Length=1679328 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||||||||| ||| || || || ||||| || || | |||| Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 |||||||| | || ||| |||||| |||||||||||||| || ||||| Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 643646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612850118451120