Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq13143 154 3e-32
seq46 147 5e-30
seq20611 136 9e-27
seq1581 131 4e-25
>seq13143
Length=1991197
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | |||||| || || || || |||||||| |||| ||||||||| | || ||
Sbjct 1626608 CGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTG 1626549
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||| |||||||| || |||||||| |||||||||||||| ||| ||| |||
Sbjct 1626548 CGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 1626489
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||||||| || | |||||| | | || || || |
Sbjct 1626488 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGG 1626429
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || ||||||||||| || ||
Sbjct 1626428 GTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTG 1626391
Score = 116 bits (128), Expect = 9e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || || ||||| |||| |||||| |||| || || | ||||||
Sbjct 1624806 CAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATC 1624747
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||| |||||| || || ||||| |||||||||||||| ||| || ||||| ||
Sbjct 1624746 TTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 1624687
Query 199537 CTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595
|| || ||| || || ||| || | |||||| | | || || || | ||||| |
Sbjct 1624686 TTGGAT-TTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGG 1624628
Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| || || || || || || || || ||
Sbjct 1624627 TCTTGCCAGTCAGCGTCTTGACGAAGATCTG 1624597
Score = 116 bits (128), Expect = 9e-21
Identities = 94/114 (82%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || ||||| || |||| ||||||||| | || ||| | ||||||
Sbjct 1626372 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATC 1626313
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
||||| ||| || ||||||||||| | |||||||||||| ||| ||| |||||
Sbjct 1626312 TTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTC 1626259
Score = 107 bits (118), Expect = 5e-18
Identities = 92/114 (81%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || || ||||| |||| |||||| |||| || || | ||||||
Sbjct 1625597 CAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATC 1625538
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
||||| |||||| || || ||||| |||||||||||||| ||| || |||||
Sbjct 1625537 TTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTC 1625484
Score = 91.5 bits (100), Expect = 3e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||||||||| || ||||||||||||||| | ||| || |||| |||||| ||||||||
Sbjct 1626289 ATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAA 1626348
Query 200998 GAGTCTACTCTTCACCTTGT 201017
||||| || || || |||||
Sbjct 1626349 GAGTCCACCCTCCATCTTGT 1626368
>seq46
Length=2207375
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||||||||| |||||||| |||| ||||||||||| || || | ||||||
Sbjct 2031654 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCC 2031595
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| ||||||||||| || ||| ||| ||||| |||
Sbjct 2031594 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 2031535
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| || | |||||| | | || || ||||| ||||| |||
Sbjct 2031534 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTC 2031475
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || || || ||
Sbjct 2031474 TTGCCAGTCAGCGTCTTGACGAAGATCTG 2031446
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||||||||| |||||||| |||| ||||||||| | || || | |||||||
Sbjct 2030993 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 2030934
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| |||||||||||||| ||| ||| ||||| |||
Sbjct 2030933 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 2030874
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| || | |||||| | | || || || | ||||| |||
Sbjct 2030873 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 2030814
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || || || ||
Sbjct 2030813 TTGCCAGTCAGCGTCTTGACGAAGATCTG 2030785
Score = 141 bits (156), Expect = 2e-28
Identities = 159/210 (76%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||||||||| |||||||| |||| ||||||||| | || || | |||||||
Sbjct 2030765 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 2030706
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| |||||||||||||| ||| ||| ||||| ||
Sbjct 2030705 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 2030646
Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| || ||| || ||||| || | |||||| | | || || || | ||||| ||
Sbjct 2030645 TGGAT-TTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 2030587
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || || || |||||||| || ||
Sbjct 2030586 CTTGCCAGTCAGCGTCTTCACAAAGATCTG 2030557
Score = 140 bits (154), Expect = 8e-28
Identities = 152/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||||||||| |||||||| |||| ||||||||| | || || | |||||||
Sbjct 2031426 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 2031367
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || ||||| |||||||||||||| ||| ||| ||||| |||
Sbjct 2031366 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 2031307
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| || | |||||| | | || || || | ||||| ||
Sbjct 2031306 TGGATCTTGGCCTTGACGTTCTCTATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTT 2031247
Query 199598 TTACCCGTGAGAGTTTTCACAA 199619
||||| || | || |||||||
Sbjct 2031246 TTACCAGTCAAGGTCTTCACAA 2031225
Score = 136 bits (150), Expect = 9e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || ||||| || |||| ||||||||| | || ||| | ||||||
Sbjct 2031222 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATC 2031163
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||| ||| || ||||||||||| | |||||||||||| ||| ||| ||||| ||
Sbjct 2031162 TTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATC 2031103
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| ||||| ||| ||| || | |||||| | | || || || | ||||| ||
Sbjct 2031102 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 2031043
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || | || ||||| || || ||
Sbjct 2031042 CTTGCCAGTCAAGGTCTTCACGAAGATCTG 2031013
Score = 131 bits (144), Expect = 4e-25
Identities = 162/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | |||||| || ||||| || |||||||| |||| ||||||||| | || ||
Sbjct 2031891 CGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 2031832
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||||||||| || |||||||| |||||||||||||| ||| ||| |||
Sbjct 2031831 CGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 2031772
Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| || || || ||| || || || || | |||||| | | || || || |
Sbjct 2031771 TCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAG 2031713
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || | || ||||| || || ||
Sbjct 2031712 GGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 2031674
Score = 91.5 bits (100), Expect = 3e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||||||||| || ||||||||||||||| | ||| || |||| |||||| ||||||||
Sbjct 2031139 ATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAA 2031198
Query 200998 GAGTCTACTCTTCACCTTGT 201017
||||| || || || |||||
Sbjct 2031199 GAGTCCACCCTCCATCTTGT 2031218
>seq20611
Length=922441
Score = 136 bits (150), Expect = 9e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| ||||| || | ||| ||||| || |||| ||||||||||| ||| || | |||||
Sbjct 520559 CAGCACAAGATGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATC 520618
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||||||| || ||||| ||||| | | ||||||||| || ||| |||||| ||
Sbjct 520619 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 520678
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| ||||| ||| ||| || | ||||| ||| || || || | ||||| ||
Sbjct 520679 CTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 520738
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||| ||||| ||||| ||||| || ||
Sbjct 520739 CTTACCAGTGAGGGTTTTGACAAAGATCTG 520768
Score = 111 bits (122), Expect = 4e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| ||||| ||||||| ||||||||||| ||| || | |||||||||||||| || |||
Sbjct 520347 GTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACCATCTTCCAGCTGTTTGCCG 520406
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552
|| ||||| | | ||||||||| || ||| |||||| ||||| ||||| |||
Sbjct 520407 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATACCTTCTTTATCCTGGATCTTAGCCTTG 520466
Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612
||| || | |||||| ||| || || || | ||||| ||||| || || | ||
Sbjct 520467 ACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTC 520526
Query 199613 TTCACAAAAATTTG 199626
|| || || || ||
Sbjct 520527 TTGACGAAGATCTG 520540
>seq1581
Length=2594311
Score = 131 bits (144), Expect = 4e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| || || || | || ||||| || |||| ||||||||||| || || | |||||
Sbjct 1373185 CAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATC 1373244
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||||||| || || |||||||| || | ||||||||| || ||| |||||| ||
Sbjct 1373245 TTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 1373304
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| |||||| ||| ||| || | |||||| ||| || || || | ||||| ||
Sbjct 1373305 CTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATGGT 1373364
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || ||||| ||||| ||||| || ||
Sbjct 1373365 CTTGCCAGTGAGGGTTTTGACAAAGATCTG 1373394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177627379130694
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