Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq19301 118 1e-21 seq3398 118 1e-21 seq77944 116 4e-21 seq6006 87.8 2e-12 seq16819 82.4 9e-11 >seq19301 Length=1192634 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||||||| |||||||||| ||| ||||| |||||||| | || || || || Sbjct 383136 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 383195 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| |||||| ||||||||||||||||||||||| || || Sbjct 383196 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 383255 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||||| ||||| |||| | || || | ||||| Sbjct 383256 GGTCTCTGTCTGAGACTCAATGATGGCATACCACA 383290 >seq3398 Length=854497 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||||||| |||||||||| ||||||||| |||||||| | ||||| || || Sbjct 23557 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 23498 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| || || |||||| ||||||||||| ||||||||||| || || Sbjct 23497 CAGGTTCTGCTGGTTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCC 23438 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||||| ||||| |||| | || || | ||||| Sbjct 23437 GGTCTCTGTCTGAGACTCAATGATGGCATACCACA 23403 >seq77944 Length=846 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||||||| |||||||||| ||||||||| |||||||| | ||||| || || Sbjct 148 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 89 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| || || |||||| ||||||||||| ||||||||||| || || Sbjct 88 CAGGTTCTGCTGGTTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCC 29 Query 106612 CGTCTCCGTCTGTGACT 106628 ||||| ||||| |||| Sbjct 28 GGTCTCTGTCTGAGACT 12 >seq6006 Length=139621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | ||||||||||| |||||| || || |||||||| || | ||||| Sbjct 86163 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86222 Query 117353 TCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | | ||| |||||| ||| || |||||||| |||||||| || |||||| ||||| Sbjct 86223 TTAGCCAGAAAATAGAAGCA-AAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAA 86281 Query 117412 GC 117413 || Sbjct 86282 GC 86283 >seq16819 Length=1945512 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | ||||||||||| |||||| || || |||||||| || | ||||| Sbjct 739164 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 739105 Query 117353 TCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | | ||| |||||| ||| || ||||| || |||||||| || |||||| ||||| Sbjct 739104 TTAGCCAGAAAATAGAAGCA-AAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAA 739046 Query 117412 GC 117413 || Sbjct 739045 GC 739044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589348915813680