Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq16819 120 3e-22
seq11759 114 1e-20
seq11199 114 1e-20
seq6006 114 1e-20
>seq16819
Length=1945512
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || | |||||||| |||||||| || |
Sbjct 739164 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 739105
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
||| |||||| ||||||||||| || ||||||||||| || ||||| || || |||||||
Sbjct 739104 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 739045
Query 19103 CAACTAGTCTTTCTCC 19118
| || | ||| || ||
Sbjct 739044 CCACCACTCTCTCCCC 739029
>seq11759
Length=1730004
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || | || | || |||||||| || ||||| |
Sbjct 147487 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCT 147546
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| |||||| | || | ||||||||||||||| ||||| || ||||||||||||||||| |
Sbjct 147547 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATG 147606
Query 19103 CAACTAGTCTTTCTCC 19118
| |||| || |||||
Sbjct 147607 CTACTAATCGCTCTCC 147622
Score = 96.9 bits (106), Expect = 4e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521
|| || ||||||||||| || ||||||| |||| ||| ||||| ||||| || ||| ||
Sbjct 149182 ACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGGA 149241
Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574
|| || |||||||| || ||||||| ||| |||||||| |||| |||||
Sbjct 149242 TACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTTCTTTGAGAAGGGGTTC 149294
>seq11199
Length=1679328
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || | || | || |||||||| |||||||| |
Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| |||||| | || | ||||||||||||||| ||||| || ||||| ||||||||||| |
Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 643635
Query 19103 CAACTAGTCTTTCTCC 19118
| |||| || |||||
Sbjct 643634 CTACTAATCGCTCTCC 643619
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521
|| || ||||||||||| || ||||||| |||| ||| ||||| ||||| || ||| ||
Sbjct 641021 ACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGGA 640962
Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574
|| || ||||| || || ||||||| ||| |||||| | |||| |||||
Sbjct 640961 TACTGAATAGGGAAAATGACAAATCGTTTTGGGTTTTCTCTGAGAAGGGGTTC 640909
>seq6006
Length=139621
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || | |||||||| |||||||| || |
Sbjct 86163 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86222
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
||| |||||| ||||||||||| || || |||||||| || ||||| || || |||||||
Sbjct 86223 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 86282
Query 19103 CAACTAGTCTTTCTCC 19118
| || | ||| || ||
Sbjct 86283 CCACCACTCTCTCCCC 86298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561506767422480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |