Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq19376 125 6e-24
seq75467 84.2 2e-11
>seq19376
Length=955028
Score = 125 bits (138), Expect = 6e-24
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||| || || || | ||||||||||||||| || ||
Sbjct 784198 AGTCCAGTGATGTGGGCAATCATGTAGGTCAGCAGTGCGTAGCTGGCGATGTTGAAAGGC 784257
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || || || || || || | |||||| ||||||||||| | ||| ||||| |
Sbjct 784258 ACACCCAGACCGATATCACCAGAGCGCTGGTACAGCTGACACGACAACTCACCGTCTGAC 784317
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
|||||||||||||||| | |||||||| || | ||||| ||
Sbjct 784318 ACGTAAAACTGACACAACGCATGGCACGGGGGCAACGCCATCAG 784361
Score = 122 bits (134), Expect = 7e-23
Identities = 130/169 (77%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
|||||| |||| || ||||| || ||||||||||| || || || || || ||||| ||
Sbjct 787056 CATGTCTTTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATAAACGGGACCCAGATC 787115
Query 30210 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
||| || |||| | ||| |||||| |||| |||| ||| || ||||| ||||| || |
Sbjct 787116 TCCTTCCTCCCGATCGCT-GAAGCCGTTCTTATCCAGAAACTCCCTGGAGCCGTTAGCAT 787174
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317
||||||| | || |||||||| || |||||||||| || || || ||
Sbjct 787175 CCCAGATTCTCACACCCTTCTCTGACAGCTCTTTGGCATTGGTTGAACC 787223
>seq75467
Length=733
Score = 84.2 bits (92), Expect = 2e-11
Identities = 89/115 (77%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
|||||| |||| || ||||| || ||||||||||| || || || || || ||||| ||
Sbjct 619 CATGTCTTTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATAAACGGGACCCAGATC 678
Query 30210 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30263
||| || |||| | ||| |||||| |||| |||| ||| || ||||| |||||
Sbjct 679 TCCTTCCTCCCGATCGCT-GAAGCCGTTCTTATCCAGAAACTCCCTGGAGCCGTT 732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408190901326586
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |