Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq19376 125 6e-24 seq75467 84.2 2e-11 >seq19376 Length=955028 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | ||||||||||||||| || || Sbjct 784198 AGTCCAGTGATGTGGGCAATCATGTAGGTCAGCAGTGCGTAGCTGGCGATGTTGAAAGGC 784257 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || || || || || || | |||||| ||||||||||| | ||| ||||| | Sbjct 784258 ACACCCAGACCGATATCACCAGAGCGCTGGTACAGCTGACACGACAACTCACCGTCTGAC 784317 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 |||||||||||||||| | |||||||| || | ||||| || Sbjct 784318 ACGTAAAACTGACACAACGCATGGCACGGGGGCAACGCCATCAG 784361 Score = 122 bits (134), Expect = 7e-23 Identities = 130/169 (77%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| || ||||| || ||||||||||| || || || || || ||||| || Sbjct 787056 CATGTCTTTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATAAACGGGACCCAGATC 787115 Query 30210 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||| || |||| | ||| |||||| |||| |||| ||| || ||||| ||||| || | Sbjct 787116 TCCTTCCTCCCGATCGCT-GAAGCCGTTCTTATCCAGAAACTCCCTGGAGCCGTTAGCAT 787174 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 ||||||| | || |||||||| || |||||||||| || || || || Sbjct 787175 CCCAGATTCTCACACCCTTCTCTGACAGCTCTTTGGCATTGGTTGAACC 787223 >seq75467 Length=733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| || ||||| || ||||||||||| || || || || || ||||| || Sbjct 619 CATGTCTTTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATAAACGGGACCCAGATC 678 Query 30210 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTT 30263 ||| || |||| | ||| |||||| |||| |||| ||| || ||||| ||||| Sbjct 679 TCCTTCCTCCCGATCGCT-GAAGCCGTTCTTATCCAGAAACTCCCTGGAGCCGTT 732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408190901326586