Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq46 102 6e-17
seq20611 100 2e-16
seq13143 96.9 3e-15
seq1581 86.0 5e-12
>seq46
Length=2207375
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| ||||| || || || || || ||||| |||| | || | |||| |||| ||
Sbjct 2031874 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTG 2031815
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|||||| || || |||| |||||| || || || ||||||||||| || ||||| |||||
Sbjct 2031814 CTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATTTT 2031755
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
||| ||| | || | ||||| | || || || || |||| || ||||| ||
Sbjct 2031754 AGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 2031695
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
|| || || || || ||||||||
Sbjct 2031694 CAAGGTCTTCACGAAGATCTGCAT 2031671
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || || || || || ||||| |||| | || | |||| |||| |||
Sbjct 2030756 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGC 2030697
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || |||| |||||| || || || ||||||||||| || ||||| |||||
Sbjct 2030696 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATTTTA 2030637
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | ||||| | || || || || |||| || ||||| ||
Sbjct 2030636 GCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 2030577
Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480
| || || ||||| |||||||| |||||| ||
Sbjct 2030576 AGCGTCTTCACAAAGATCTGCATCTTTACGCTAA 2030543
Score = 98.7 bits (108), Expect = 8e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 101253 AACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGG 101312
|||| | || | ||| ||||| || ||||| || || ||||| |||| | ||| |
Sbjct 2031226 AACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTC 2031167
Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372
|||| ||||| || || || || || ||||||||||| || || || ||||||||||| |
Sbjct 2031166 CATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCT 2031107
Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432
|||| || || || || || | || | ||||| | || || || || ||||
Sbjct 2031106 TATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGA 2031047
Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| || || || || || || ||||||||
Sbjct 2031046 TGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031010
>seq20611
Length=922441
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| || | ||| || || | ||| | ||| || |||||||| || ||||| || |
Sbjct 520317 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 520376
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||| || || || ||||| ||||| | ||| || || || |||
Sbjct 520377 AATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 520436
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| ||||||||||| || || || || || | || | |||||| | || ||
Sbjct 520437 ATACCTTCTTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACC 520496
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
||||| |||| || ||||| || || || || || || |||||||||
Sbjct 520497 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 520544
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| || | ||| | || | ||| | || || ||||| || || ||||| || |
Sbjct 520545 CCTCCCCTGAGACGCAGCACAAGATGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 520604
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | |||| |||| || || || ||||| ||||| | ||| || || || |||
Sbjct 520605 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 520664
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||||||||| || || || || || || | || | ||||| | || ||
Sbjct 520665 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACC 520724
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| |||| || || || || | ||||| ||||| ||||||||
Sbjct 520725 TCAAGGGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 520771
>seq13143
Length=1991197
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || | ||| ||||| || ||||| || || ||||| ||||
Sbjct 1626386 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 1626327
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | |||| ||||| || || || || || ||||||||||| || || || |||
Sbjct 1626326 AGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGA 1626267
Query 101363 ATGCCTTCTTTATCTTGAATTTT 101385
|||||||| |||||||| || ||
Sbjct 1626266 ATGCCTTCCTTATCTTGGATCTT 1626244
>seq1581
Length=2594311
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| || | ||| | || | ||| | ||| || ||||| || || ||||| || |
Sbjct 1373171 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1373230
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||| || || || || || |||| | ||| || || || |||
Sbjct 1373231 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1373290
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||||||||| || || || ||| || || | || | ||||| | || ||
Sbjct 1373291 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACC 1373350
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| |||| || ||||| || | ||||| ||||| ||||||||
Sbjct 1373351 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1373397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395864586528474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |