Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3398 100 5e-16 seq19301 87.8 3e-12 seq11199 87.8 3e-12 seq6006 87.8 3e-12 seq11759 84.2 4e-11 >seq3398 Length=854497 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| || || ||||| || || || || | ||| | ||| ||| |||| ||||| Sbjct 30070 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGAT 30011 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 ||| |||||||||||||||||||| ||| ||| ||||||||||| |||| |||||| Sbjct 30010 TGACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAG 29951 Query 221242 ACTGTTGCGCAGTCC 221256 |||||| |||| ||| Sbjct 29950 ACTGTTACGCACTCC 29936 >seq19301 Length=1192634 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| ||||| |||| |||| || |||||||| || | ||| ||||| |||||||| Sbjct 383134 ACCTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTG 383193 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | || || |||||| ||| || |||||||||||||| |||| | Sbjct 383194 CCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTG 383253 Query 221852 CCAGTCTCCAGCTGAG 221867 || ||||| ||||| Sbjct 383254 CCGGTCTCTGTCTGAG 383269 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| || || ||||| || || || || | ||| | ||| |||| | || || || Sbjct 381049 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCAAT 381108 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 ||| ||||| |||||||||||||| ||| ||| |||||||| || |||| |||||| Sbjct 381109 TGACTCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCAGCAG 381168 Query 221242 ACTGTTGCGCAGTCC 221256 |||||| |||| ||| Sbjct 381169 ACTGTTACGCACTCC 381183 >seq11199 Length=1679328 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| | ||||| ||||| || ||||| |||||||| ||| || || ||| Sbjct 643616 TTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTT 643675 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||| |||| | ||| | ||| || | |||||||| || || ||||| || Sbjct 643676 GCTGCCATCTACTGGTTGAAGAA-AAGAGGCCTGATGCCCGGACTCACCTACTCCAATGA 643734 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||||||||||| || |||| Sbjct 643735 ACTCATCAGCAGAGATGAGG 643754 >seq6006 Length=139621 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| || |||||||||||||| || ||||| || ||| || ||||| | || |||| Sbjct 86288 TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCTTCTATTTTCT 86229 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||| ||| || || |||| |||||| || || ||| ||||| || || |||||||| Sbjct 86228 GGCTAAAGAAG-AGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATCAGCAGA 86170 Query 26002 GACGAGG 26008 || |||| Sbjct 86169 GATGAGG 86163 >seq11759 Length=1730004 Score = 84.2 bits (92), Expect = 4e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| | ||||| ||||| || || || |||||||| ||| || || ||| Sbjct 147625 TTAGGAGAGCGATTAGTAGCATTTGCAGCAGTAGAAGGCATCTTCTTCTCTGGATCATTT 147566 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||| |||| | ||| | ||| || | |||||||| || || ||||| || Sbjct 147565 GCTGCCATCTACTGGTTGAAGAA-AAGCGGCCTGATGCCCGGACTCACCTACTCCAATGA 147507 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||||||||||| || |||| Sbjct 147506 ACTCATCAGCAGAGATGAGG 147487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927849983998080