Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3398 100 5e-16
seq19301 87.8 3e-12
seq11199 87.8 3e-12
seq6006 87.8 3e-12
seq11759 84.2 4e-11
>seq3398
Length=854497
Score = 100 bits (110), Expect = 5e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181
||| || || ||||| || || || || | ||| | ||| ||| |||| |||||
Sbjct 30070 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGAT 30011
Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241
||| |||||||||||||||||||| ||| ||| ||||||||||| |||| ||||||
Sbjct 30010 TGACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAG 29951
Query 221242 ACTGTTGCGCAGTCC 221256
|||||| |||| |||
Sbjct 29950 ACTGTTACGCACTCC 29936
>seq19301
Length=1192634
Score = 87.8 bits (96), Expect = 3e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791
||||| ||||| |||| |||| || |||||||| || | ||| ||||| ||||||||
Sbjct 383134 ACCTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTG 383193
Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851
||||||| | || || |||||| ||| || |||||||||||||| |||| |
Sbjct 383194 CCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTG 383253
Query 221852 CCAGTCTCCAGCTGAG 221867
|| ||||| |||||
Sbjct 383254 CCGGTCTCTGTCTGAG 383269
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181
||| || || ||||| || || || || | ||| | ||| |||| | || || ||
Sbjct 381049 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCAAT 381108
Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241
||| ||||| |||||||||||||| ||| ||| |||||||| || |||| ||||||
Sbjct 381109 TGACTCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCAGCAG 381168
Query 221242 ACTGTTGCGCAGTCC 221256
|||||| |||| |||
Sbjct 381169 ACTGTTACGCACTCC 381183
>seq11199
Length=1679328
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/140 (75%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|| || ||||| | ||||| ||||| || ||||| |||||||| ||| || || |||
Sbjct 643616 TTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTT 643675
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988
|| ||||||| |||| | ||| | ||| || | |||||||| || || ||||| ||
Sbjct 643676 GCTGCCATCTACTGGTTGAAGAA-AAGAGGCCTGATGCCCGGACTCACCTACTCCAATGA 643734
Query 25989 GCTCATCAGCAGGGACGAGG 26008
||||||||||| || ||||
Sbjct 643735 ACTCATCAGCAGAGATGAGG 643754
>seq6006
Length=139621
Score = 87.8 bits (96), Expect = 3e-12
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||| || |||||||||||||| || ||||| || ||| || ||||| | || ||||
Sbjct 86288 TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCTTCTATTTTCT 86229
Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001
|||| ||| || || |||| |||||| || || ||| ||||| || || ||||||||
Sbjct 86228 GGCTAAAGAAG-AGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATCAGCAGA 86170
Query 26002 GACGAGG 26008
|| ||||
Sbjct 86169 GATGAGG 86163
>seq11759
Length=1730004
Score = 84.2 bits (92), Expect = 4e-11
Identities = 104/140 (74%), Gaps = 2/140 (1%)
Strand=Plus/Minus
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|| || ||||| | ||||| ||||| || || || |||||||| ||| || || |||
Sbjct 147625 TTAGGAGAGCGATTAGTAGCATTTGCAGCAGTAGAAGGCATCTTCTTCTCTGGATCATTT 147566
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988
|| ||||||| |||| | ||| | ||| || | |||||||| || || ||||| ||
Sbjct 147565 GCTGCCATCTACTGGTTGAAGAA-AAGCGGCCTGATGCCCGGACTCACCTACTCCAATGA 147507
Query 25989 GCTCATCAGCAGGGACGAGG 26008
||||||||||| || ||||
Sbjct 147506 ACTCATCAGCAGAGATGAGG 147487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 927849983998080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |