Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq19301 105 9e-18 seq16217 105 9e-18 seq20828 104 3e-17 seq20691 98.7 1e-15 seq11300 96.9 5e-15 seq14550 91.5 2e-13 seq3435 87.8 2e-12 seq17755 84.2 3e-11 >seq19301 Length=1192634 Score = 105 bits (116), Expect = 9e-18 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 ||| ||| |||||||||||||||||||| |||| |||| ||||| | ||||||||||||| Sbjct 590116 TAAGCCACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 590057 Query 11781 TTCGATTCCCCGACGAGGAG 11800 ||||||||||||||| |||| Sbjct 590056 TTCGATTCCCCGACGGGGAG 590037 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 590108 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 590049 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 590048 CCCGACGGGGAG 590037 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 139349 ACAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACC 139408 ||| |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||| Sbjct 590033 ACATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 590092 Query 139409 ACTATACTAACGAGGA 139424 |||||||||||||||| Sbjct 590093 ACTATACTAACGAGGA 590108 >seq16217 Length=694317 Score = 105 bits (116), Expect = 9e-18 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 ||| ||| |||||||||||||||||||| |||| |||| ||||| | ||||||||||||| Sbjct 146668 TAAGCCACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 146609 Query 11781 TTCGATTCCCCGACGAGGAG 11800 ||||||||||||||| |||| Sbjct 146608 TTCGATTCCCCGACGGGGAG 146589 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 146660 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 146601 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 146600 CCCGACGGGGAG 146589 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||| Sbjct 146586 CATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 146645 Query 139410 CTATACTAACGAGGA 139424 ||||||||||||||| Sbjct 146646 CTATACTAACGAGGA 146660 >seq20828 Length=894333 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 28989 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 28930 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 28929 CCCGACGGGGAG 28918 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||| Sbjct 28992 CACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 28933 Query 11786 TTCCCCGACGAGGAG 11800 |||||||||| |||| Sbjct 28932 TTCCCCGACGGGGAG 28918 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 28918 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 28977 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 28978 TACTAACGAGGA 28989 >seq20691 Length=595870 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 553979 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 554038 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 554039 CCCGACGGGGAG 554050 Score = 96.9 bits (106), Expect = 5e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 11724 ACCCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTT 11782 || || |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||| Sbjct 553973 ACTCACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTT 554032 Query 11783 CGATTCCCCGACGAGGAG 11800 | ||||||||||| |||| Sbjct 554033 CAATTCCCCGACGGGGAG 554050 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 554050 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 553991 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 553990 TACTAACGAGGA 553979 >seq11300 Length=377726 Score = 96.9 bits (106), Expect = 5e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||| |||||||||||||| |||| |||| ||||| | |||||||||||||||| | Sbjct 165213 CACTCCTCATTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAA 165154 Query 11786 TTCCCCGACGAGGAGGGAGG 11805 |||||||||| ||||| ||| Sbjct 165153 TTCCCCGACGGGGAGGAAGG 165134 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||| ||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 165210 TCCTCATTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 165151 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 165150 CCCGACGGGGAG 165139 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 165139 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 165198 Query 139413 TACTAACGAGGA 139424 |||||| ||||| Sbjct 165199 TACTAATGAGGA 165210 >seq14550 Length=541 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||||||||||||||| ||||| ||| ||||| | ||| |||||||||||||||| Sbjct 151 TTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATT 210 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 211 CCCCGACGGGGAG 223 Score = 86.0 bits (94), Expect = 8e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 152 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 211 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 212 CCCGACGGGGAG 223 >seq3435 Length=1289550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||||||||||||||| ||||| | || ||||| | ||| | |||||||||||||| Sbjct 157 TTCCTCGTTAGTATAGTGGACAGTATCCTCGCCTGTCACGCGGAAAACCGGGGTTCGATT 216 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 217 CCCCGACGGGGAG 229 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| ||||| | || ||||| | ||| | ||||||||||||||| Sbjct 158 TCCTCGTTAGTATAGTGGACAGTATCCTCGCCTGTCACGCGGAAAACCGGGGTTCGATTC 217 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 218 CCCGACGGGGAG 229 >seq17755 Length=1282 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||||||||||||||| ||| | ||| ||||| | || ||||||||||||||| Sbjct 233 ATTCCTCGTTAGTATAGTGGACAGTCTCTCCGCCTGTCACGTGGAAGACCGGGGTTCGAT 174 Query 8716 TCCCCGACGAGGAG 8729 ||||||||| |||| Sbjct 173 TCCCCGACGGGGAG 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652145586898080