Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq13143 159 3e-34 seq46 154 1e-32 seq1581 141 9e-29 seq20611 116 4e-21 seq19301 104 2e-17 >seq13143 Length=1991197 Score = 159 bits (176), Expect = 3e-34 Identities = 160/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| || |||| | | | || || |||| Sbjct 1626591 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCA-TCTTCAAGCT 1626533 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || ||||||||||| ||||| |||||||||||||| ||||| Sbjct 1626532 GCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCT 1626473 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| |||||| ||||||| || |||| ||||| ||| ||||| | Sbjct 1626472 TGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAG 1626413 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || || |||||||| Sbjct 1626412 TCAGGGTTTTCACAAAGATCTGCAT 1626388 Score = 150 bits (166), Expect = 2e-31 Identities = 160/206 (78%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || |||||||| || |||| | | | || || | || Sbjct 1624797 ATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCA-TCTTCCAACT 1624739 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || ||||||||||| |||||||||||||||||||| ||| | Sbjct 1624738 GCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGAT-T 1624680 Query 133576 TTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || |||| | ||||| |||||| ||||||| || |||| ||||| ||| ||||| Sbjct 1624679 TTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCA 1624620 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 1624619 GTCAGCGTCTTGACGAAGATCTGCAT 1624594 Score = 105 bits (116), Expect = 6e-18 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TTGAGCTG 133588 || || ||||||||||| ||||| |||||||||||||| ||| ||| || |||| | Sbjct 1625743 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGAT-TTTAGCTTTGACGTT 1625685 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || || || Sbjct 1625684 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTCTTGAC 1625625 Query 133649 GAAAATCTGCAT 133660 ||| |||||||| Sbjct 1625624 GAAGATCTGCAT 1625613 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/127 (77%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || |||||||| || |||| | | | || || | || Sbjct 1625588 ATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCA-TCTTCCAACT 1625530 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || ||||||||||| |||||||||||||||||||| ||| | Sbjct 1625529 GCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGAT-T 1625471 Query 133576 TTTGCTT 133582 || |||| Sbjct 1625470 TTAGCTT 1625464 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| ||| || ||| | | | || || | || Sbjct 1626363 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCTTCCAACT 1626305 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| ||| | || | ||||||||||| ||||| ||||||||||| || ||||| Sbjct 1626304 GTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCT 1626245 Query 133576 TTTGCTTGA 133584 | ||||| Sbjct 1626244 TGGCCTTGA 1626236 >seq46 Length=2207375 Score = 154 bits (170), Expect = 1e-32 Identities = 157/202 (78%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 2030978 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGCC 2030920 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| ||||| ||||||||||| || |||||| ||| Sbjct 2030919 AGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 2030860 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| ||||||| || |||| ||||| ||| ||||| ||||| || Sbjct 2030859 GACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGCGT 2030800 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 2030799 CTTGACGAAGATCTGCATGCCT 2030778 Score = 145 bits (160), Expect = 7e-30 Identities = 159/206 (77%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| || ||| | | | || || |||| Sbjct 2031874 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCT 2031816 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || ||||||||||| ||||| |||||||||||||| ||| | Sbjct 2031815 GCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGAT-T 2031757 Query 133576 TTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || |||| | ||||| |||||| ||||||| || |||| ||||| ||| ||||| Sbjct 2031756 TTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCA 2031697 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 2031696 GTCAAGGTCTTCACGAAGATCTGCAT 2031671 Score = 141 bits (156), Expect = 9e-29 Identities = 154/199 (77%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 2030750 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGCC 2030692 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| | || || ||||||||||| ||||| |||||||||||||| ||| ||| || | Sbjct 2030691 AGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGAT-TTTAGCTT 2030633 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| ||||||| || |||| ||||| ||| ||||| ||||| | Sbjct 2030632 TCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGCG 2030573 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 2030572 TCTTCACAAAGATCTGCAT 2030554 Score = 141 bits (156), Expect = 9e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| ||| || ||| | | | || || | || Sbjct 2031213 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCTTCCAACT 2031155 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| ||| | || | ||||||||||| ||||| ||||||||||| || ||||| Sbjct 2031154 GTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCT 2031095 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| |||||| ||||||| || |||| ||||| ||| ||||| | Sbjct 2031094 TGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAG 2031035 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || ||||| |||||||| Sbjct 2031034 TCAAGGTCTTCACGAAGATCTGCAT 2031010 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | ||||| ||||||||||| Sbjct 2031639 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCCTCCAGCTGCTTGCC 2031581 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || ||||| |||||||||||||| |||||| ||| Sbjct 2031580 AGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 2031521 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | |||| ||| ||||| ||||| || Sbjct 2031520 GACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTCTTGCCAGTCAGCGT 2031461 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 2031460 CTTGACGAAGATCTGCAT 2031443 Score = 122 bits (134), Expect = 8e-23 Identities = 134/176 (76%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | || || |||||||| || Sbjct 2031411 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTACC 2031353 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| ||||| |||||||||||||| |||||| ||| Sbjct 2031352 AGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 2031293 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | ||| | |||||| ||||||| || |||| ||||| |||||| || |||| Sbjct 2031292 GACGTTCTCTATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTTTTACCAGTCA 2031237 >seq1581 Length=2594311 Score = 141 bits (156), Expect = 9e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| || || ||| ||| | || || |||| Sbjct 1373194 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCA-TCTTCCAGCT 1373252 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| ||| | || |||| ||||||||| || || |||||||| ||||| ||||| Sbjct 1373253 GTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCT 1373312 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | ||||| |||||| | ||||| || || | ||||| ||| ||||| | Sbjct 1373313 TTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATGGTCTTGCCAG 1373372 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| || || |||||||| Sbjct 1373373 TGAGGGTTTTGACAAAGATCTGCAT 1373397 >seq20611 Length=922441 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| ||||| Sbjct 520575 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA-TCTTCCAGCTGTTTGCC 520633 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| || || |||||||| ||||| |||||| ||| Sbjct 520634 GGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTT 520693 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| | ||||| || || | ||||| ||| || || || || || Sbjct 520694 GACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGT 520753 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || |||||||| Sbjct 520754 TTTGACAAAGATCTGCAT 520771 Score = 113 bits (124), Expect = 4e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||||||||| || || ||||| || || ||| ||| | || || |||| Sbjct 520340 ATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACCA-TCTTCCAGCT 520398 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || | || ||||||||| || || || ||||| || || ||||| Sbjct 520399 GTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATACCTTCTTTATCCTGGATCT 520458 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| | ||||| || || | ||||| ||| ||||| | Sbjct 520459 TAGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTG 520518 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||| || || ||||| ||||||||| || Sbjct 520519 TCAAGGTCTTGACGAAGATCTGCATGCCT 520547 >seq19301 Length=1192634 Score = 104 bits (114), Expect = 2e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||| ||||| | ||||| || ||||||||||| ||||| ||||| || | Sbjct 383150 TGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTGGT 383209 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||||||| |||||| || |||||||| |||||||| ||| ||| || || Sbjct 383210 TGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTC 383261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482903044237680