Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq85242 131 2e-25 seq22175 84.2 3e-11 >seq85242 Length=2466 Score = 131 bits (144), Expect = 2e-25 Identities = 283/420 (67%), Gaps = 14/420 (3%) Strand=Plus/Minus Query 176878 AACGTGTTTTC--CAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTT 176935 || |||||| | |||| |||||| | || ||||| ||||||| || | | | Sbjct 599 AAAGTGTTTACGCCAGTCAAAGTACTTCAGGTAAAGCTCCTCGTTTTTGTCAAGGAAGAG 540 Query 176936 GAGGTGCGAGGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCC 176995 ||| | ||||| || | || |||| |||| | ||||| |||||||| | ||| Sbjct 539 GAGATAATCAGCCAGCTCCTTCGGAGACGGCAAGTCATCAACGTGGATGAAAGCATTTCC 480 Query 176996 CGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGC 177055 | | ||| | || | || ||||| || | || |||||| || | |||||| | ||| Sbjct 479 CTGCACGAAGTTCTGATAGTTCTCCCTTGGTGGTCCGAGCACAACGGGTACGG----TGC 424 Query 177056 CATAAGAGATCGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAA 177111 || || | ||| || | ||| || || |||||||| |||| | |||||||| | Sbjct 423 CAACGGAAAGCGGGTTGTACAATTTCTCAGTGATATAGTCTTTGTGAATCGAGTTCTCGA 364 Query 177112 ACGCGAGATAGAATTTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATA 177169 | || | ||||||||||||| | || |||| | || |||| | || | || || Sbjct 363 ATGCCAAATAGAATTTACAGCTTGCGATTGTAGGGAAAT--AGTCCTGGTCAGAAATGTA 306 Query 177170 ATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTA 177229 || || | | | | |||||| |||| | || ||||| || ||| || |||||| Sbjct 305 CTCACCAAATGCTTGTCCGTATGCATGAACCTCGATGTGCTTGTAGAGTTCATTGTAGTA 246 Query 177230 TCTCGATCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 | || ||| ||||| || ||||||||||||||||| ||| |||| | |||| |||| Sbjct 245 TTTCACTCTGACGTGATCTGGGTTCCAATTGCTGACGATCCAACAAATCAGCTTGTTCTT 186 >seq22175 Length=1864744 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || | || |||| | |||| | ||||| |||||||| | |||| | | | | Sbjct 234174 GCCAGCTCCTTTGGAGACGGGAAGTCATCGACGTGGATGAAAGCATTTCCCTGCATGAAG 234233 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || | || ||||| || | || |||||| || | |||||| | || | ||| | Sbjct 234234 TTCTGATAGTTCTCCCTTGGTGGTCCGAGCACCACGGGTACAGTGCCGACGGAAAGCGGG 234293 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| | ||| || || |||||||| |||| | ||||||||||| || | ||| ||| Sbjct 234294 TTGTACAATTTCTCAGTGATATAGTCTTTGTGAATTGAGTTCTCAAATGCCAAATAAAAT 234353 Query 177126 TTACAG 177131 |||||| Sbjct 234354 TTACAG 234359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577812484867200