Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq20611 118 7e-22 seq13143 113 3e-20 seq46 113 3e-20 seq1581 109 4e-19 >seq20611 Length=922441 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || || | ||| ||||||| ||| | ||| ||||||||| |||||||| || || Sbjct 520316 ACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGA 520375 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 520376 CAATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 520435 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||||||| || || || || | | | ||| |||||| |||| || | Sbjct 520436 AATACCTTCTTTATCCTGGATCTTAGCCTTGA-CGTTCTCAATGGTGTCACTTGGCTCAA 520494 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || ||||| || || || || ||||||||||| Sbjct 520495 CCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 520543 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||| | ||| | |||| |||||| || |||||||| || || Sbjct 520545 CCTCCCCTGAGACGCAGCACAAGATGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 520604 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||| ||||| |||||||| ||||| | |||||| || | || Sbjct 520605 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 520664 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | | || | || | |||||||||| || || Sbjct 520665 ATGCCTTCTTTGTCCTGGATCTT-AGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAAC 520723 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| || | ||||| |||||||||||||| Sbjct 520724 CTCAAGGGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 520771 >seq13143 Length=1991197 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | || | ||| || ||| || || || ||||||||||| || Sbjct 1624821 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 1624762 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || ||||| || || || ||||| |||| ||||||||| || | || Sbjct 1624761 CAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 1624702 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||||| | || || | || | ||||||||| | || | Sbjct 1624701 GATGCCTTCCTTGTCTTGGATTTT-AGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAA 1624643 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||| || || ||||||||||| Sbjct 1624642 CCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 1624594 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | || | ||| || ||| |||||| || |||||||| ||||| Sbjct 1626387 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 1626328 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || ||||| ||||| ||||| || |||||||||||||| || | || Sbjct 1626327 CAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGG 1626268 Query 33642 CACACCTTCTTTGTC 33656 | ||||| || || Sbjct 1626267 AATGCCTTCCTTATC 1626253 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | || | ||| || ||| || || || ||||||||||| || Sbjct 1625612 ACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 1625553 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || ||||| || || || ||||| |||| ||||||||| || | || Sbjct 1625552 CAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 1625493 Query 33642 CACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 1625492 GATGCCTTCCTTGTC 1625478 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||| || || |||||||| ||||| || |||||| | || || | || Sbjct 1626591 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCAAGCTG 1626532 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || |||| ||||||||| || | || | ||||| ||||| || || Sbjct 1626531 CTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 1626472 Query 33666 CTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 |||| | | ||| ||||||||| | || || || | ||||| || || || | Sbjct 1626471 GGCCTTCA-CGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAG 1626413 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | | ||||| ||||||||||||||| Sbjct 1626412 TCAGGGTTTTCACAAAGATCTGCATA 1626387 >seq46 Length=2207375 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || |||||| ||| || || |||||||| ||||| || |||||| | || || Sbjct 2030763 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTC 2030704 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || || || |||| ||||||||| || | || | ||||| ||||| Sbjct 2030703 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 2030644 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| ||||| ||| ||| ||||||||| | || || || | ||||| || | Sbjct 2030643 GATTTTAGCTTTCA-CATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCT 2030585 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||| || |||||||||||||| Sbjct 2030584 TGCCAGTCAGCGTCTTCACAAAGATCTGCAT 2030554 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||| || |||||| ||| || || |||||||| ||||| Sbjct 2031442 ACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 2031383 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || |||| || || || ||||| |||| ||||||||| || | || Sbjct 2031382 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 2031323 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || | | || | || | ||||||||| | || | Sbjct 2031322 AATGCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCTATGGTGTCGCTGGGCTCAA 2031264 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAA 33739 | || | ||||| |||||||| || || || || |||| Sbjct 2031263 CCTCGAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAA 2031225 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||| || |||||| ||| || || |||||||| || || Sbjct 2031670 ACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2031611 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || |||| || || || || || |||| |||||||||||| | || Sbjct 2031610 CAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 2031551 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || | | || | || | |||||| || | || | Sbjct 2031550 AATGCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 2031492 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | ||| || || |||||||||||| Sbjct 2031491 CTTCCAAAGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATA 2031442 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||| || |||||| ||| || || |||||||| ||||| Sbjct 2031009 ACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 2030950 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || |||| || || || || || |||| ||||||||| || | || Sbjct 2030949 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 2030890 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || | | || | || | ||||||||| | || | Sbjct 2030889 AATGCCTTCCTTATCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAA 2030831 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||| || || ||||||||||| Sbjct 2030830 CCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2030782 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33533 AACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTT 33592 |||| | || | ||| || ||| |||||| || |||||||| ||||| || |||||| Sbjct 2031226 AACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTC 2031167 Query 33593 CGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTT 33652 | || ||||| ||||| ||||| || |||||||||||||| || | || | ||||| | Sbjct 2031166 CATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCT 2031107 Query 33653 TGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTG 33711 | || || || | | || | || | ||||||||| | || || || | ||| Sbjct 2031106 TATCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTG 2031048 Query 33712 ATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || || || || || || || |||||||||||| Sbjct 2031047 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATA 2031009 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||| || || |||||||| ||||| || |||||| | || |||| || Sbjct 2031874 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTG 2031815 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || |||| ||||||||| || | || | ||||| ||||| ||||| Sbjct 2031814 CTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATTTT 2031755 Query 33666 CTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 ||| | ||| ||| ||||||||| | || || || | ||||| || || || | Sbjct 2031754 AGCTTTGA-CATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAG 2031696 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || |||||||||||| Sbjct 2031695 TCAAGGTCTTCACGAAGATCTGCATA 2031670 >seq1581 Length=2594311 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || || | ||| | ||||| ||| | ||| |||||| || |||||||| || || Sbjct 1373170 ACCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 1373229 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || |||| ||||| || || || |||| | |||||| || | || Sbjct 1373230 CAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 1373289 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || || | || | || | ||||||||||| || | Sbjct 1373290 AATGCCTTCTTTGTCCTGGATCTT-TGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGA 1373348 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 1373349 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1373397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328360751053440