Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13143 100 7e-16 seq20611 98.7 2e-15 seq46 96.9 8e-15 seq1581 91.5 3e-13 >seq13143 Length=1991197 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| ||| || ||| || | | ||||||||||| || Sbjct 1626244 AAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTCGCCGGCAAA 1626303 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||||| | ||| || |||| |||||| ||||||||||||| || || || Sbjct 1626304 CAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCAT 1626363 Query 206374 CTTGT 206378 ||||| Sbjct 1626364 CTTGT 1626368 >seq20611 Length=922441 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| |||||| ||||| || || || ||||| | || || || ||| Sbjct 520768 CAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 520712 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 |||||| | || || ||| ||||| || || |||||||| ||| || ||| Sbjct 520711 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 520652 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || | ||||| ||||| || ||| |||||||||| | || ||| | || |||||| Sbjct 520651 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 520592 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||||| ||| | || ||||| Sbjct 520591 ATCCAGAAAGAGTCCACTTTGCATCTTGT 520563 >seq46 Length=2207375 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || || |||||||||||||| || |||| Sbjct 2031446 CAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACTTTGGAAGTTGAGCCCAGTGAC 2031505 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||| ||| || || || Sbjct 2031506 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAG 2031565 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||| |||||| | || || | || |||||| || Sbjct 2031566 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCTGACTACAACATC 2031625 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 2031626 CAGAAGGAGTCCACTCTCCACCTGGT 2031651 Score = 95.1 bits (104), Expect = 3e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| || ||||| || ||||| ||| || ||| || | || |||||||| Sbjct 2030632 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGC 2030690 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || |||||| ||||||||||| | || || |||| |||||| ||||||| ||||| || Sbjct 2030691 TGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCAC 2030750 Query 206367 TCTTCACCTTGT 206378 ||| ||||| || Sbjct 2030751 TCTCCACCTGGT 2030762 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || | | ||||||||||| || Sbjct 2031094 AAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTCGCCGGCAAA 2031153 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||||| | ||| || |||| |||||| ||||||||||||| || || || Sbjct 2031154 CAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCAT 2031213 Query 206374 CTTGT 206378 ||||| Sbjct 2031214 CTTGT 2031218 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || | || |||||||| || ||| Sbjct 2030866 AAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAG 2030925 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| ||||||||||| | || || |||| |||||| ||||||| ||||| ||||| ||| Sbjct 2030926 CAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 2030985 Query 206374 CTTGT 206378 || || Sbjct 2030986 CTGGT 2030990 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| || ||||| || ||||| ||| || ||| || | || |||||||| Sbjct 2031749 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGC 2031807 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || |||||| ||||||||||| | || || |||| |||||| ||||||| ||||| || Sbjct 2031808 TGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCAC 2031867 Query 206367 TCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || | ||||| Sbjct 2031868 CCTCCATCTCGTCCTGCGTCTTCG 2031891 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || | || ||||| || || ||| Sbjct 2031299 AAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGTAAG 2031358 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| ||||||||||| | || || |||| |||||| ||||||| ||||| ||||| ||| Sbjct 2031359 CAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 2031418 Query 206374 CTTGT 206378 || || Sbjct 2031419 CTGGT 2031423 >seq1581 Length=2594311 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| |||||| ||||| || || || ||||| | || || || ||| Sbjct 1373394 CAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGC--- 1373338 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| | || || ||| |||||| || || |||||||| ||| || ||| Sbjct 1373337 GACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 1373278 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || || |||||||| || || ||| |||||||||| | || || | || |||||| Sbjct 1373277 CAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAAC 1373218 Query 206350 GTCCAGAAAGAGTCTAC 206366 ||||||||||||| || Sbjct 1373217 ATCCAGAAAGAGTCCAC 1373201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180523396387122