Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 123 3e-23
seq16819 120 4e-22
seq11199 120 4e-22
seq6006 114 2e-20
seq19301 98.7 1e-15
seq85036 86.0 9e-12
seq3398 86.0 9e-12
>seq11759
Length=1730004
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || || | |||||||| ||||| || || | || |
Sbjct 147487 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCT 147546
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| | ||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 147547 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATG 147606
Query 39759 CAACAAGTCTCTCTCC 39774
| || | || ||||||
Sbjct 147607 CTACTAATCGCTCTCC 147622
>seq16819
Length=1945512
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || || || |||||||||||||| || || | ||| |
Sbjct 739164 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 739105
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| || || | ||||||||| |||||||||||||| ||||| || || ||||| |
Sbjct 739104 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 739045
Query 39759 CAACAAGTCTCTCTCC 39774
| || | |||||| ||
Sbjct 739044 CCACCACTCTCTCCCC 739029
>seq11199
Length=1679328
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || || | |||||||| ||||| || || | || |
Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| | ||| | ||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 643635
Query 39759 CAACAAGTCTCTCTCC 39774
| || | || ||||||
Sbjct 643634 CTACTAATCGCTCTCC 643619
>seq6006
Length=139621
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || || || |||||||||||||| || || | ||| |
Sbjct 86163 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 86222
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| || || | ||||||||| || ||||||||||| ||||| || || ||||| |
Sbjct 86223 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 86282
Query 39759 CAACAAGTCTCTCTCC 39774
| || | |||||| ||
Sbjct 86283 CCACCACTCTCTCCCC 86298
>seq19301
Length=1192634
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | ||||||||| |||||||||||||| || ||||| |||||||||
Sbjct 386754 GTGCCGGCATTGAAGAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCAGAGAGCAGATTG 386813
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| ||||| ||||||| | || ||| || ||| ||||| | | || | ||||| |
Sbjct 386814 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACGGACACTCTCATCAGC 386873
Query 70111 ATATGCTGAGGTCGTTC 70127
|| || || || || ||
Sbjct 386874 ATGTGTTGTGGCCGCTC 386890
>seq85036
Length=2202
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || || || || | ||||||||| || ||||||||||| || ||||| ||||| |||
Sbjct 398 GTGCCAGCGTTGAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 339
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| ||||| ||||||| | || ||| || ||| ||||| | | || | ||||| |
Sbjct 338 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACAGACACTCTCATCAGC 279
Query 70111 ATATGCTGAGGTCGTTC 70127
|| || || || || ||
Sbjct 278 ATGTGTTGTGGCCGCTC 262
>seq3398
Length=854497
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || || || || | ||||||||| || ||||||||||| || ||||| ||||| |||
Sbjct 21604 GTGCCAGCGTTGAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 21545
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| ||||| ||||||| | || ||| || ||| ||||| | | || | ||||| |
Sbjct 21544 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACAGACACTCTCATCAGC 21485
Query 70111 ATATGCTGAGGTCGTTC 70127
|| || || || || ||
Sbjct 21484 ATGTGTTGTGGCCGCTC 21468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686173103502480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |