Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq19376 98.7 8e-16 seq17618 93.3 3e-14 seq11199 91.5 1e-13 seq6006 89.7 4e-13 seq19302 87.8 1e-12 seq11759 82.4 6e-11 >seq19376 Length=955028 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| ||| |||||||||||||| | | ||||| ||| Sbjct 784360 TGATGGCGTTGCCCCCGTGCCATGCGTTGTGTCAGTTTTACGTGTCAGACGGTGAGTTGT 784301 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | ||||| |||| || | || ||||| || || || || || || || ||||| || | Sbjct 784300 CGTGTCAGCTGTACCAGCGCTCTGGTGATATCGGTCTGGGTGTGCCTTTCAACATCGCCA 784241 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||| || || |||||||| ||| Sbjct 784240 GCTACGCACTGCTGACCTACATGATTGCCCAC 784209 >seq17618 Length=1604196 Score = 93.3 bits (102), Expect = 3e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47226 TTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAA 47285 |||||||||| ||| |||| || |||||| || | |||||||| ||||||||||| |||| Sbjct 206939 TTTTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTCGGATTAGACAATGCCGGAA 206880 Query 47286 AAACGGCATTACTCCACATGCTCAAA 47311 |||| ||||| | |||||||| ||| Sbjct 206879 AAACAACATTATTGCACATGCTTAAA 206854 >seq11199 Length=1679328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 ||| ||||| ||| | || || ||||||| ||||||||||| ||||| || ||||| || Sbjct 643615 TTTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATT 643674 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 ||| ||||| | ||||| |||||| |||| ||||||| || | || | || ||||| Sbjct 643675 TGCTGCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCCAATGA 643734 Query 44239 GTTAATAAGTCGTGATGA 44256 | || || | ||||| Sbjct 643735 ACTCATCAGCAGAGATGA 643752 >seq6006 Length=139621 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | || ||||| ||| | | ||||| || || || || || || || |||||| Sbjct 86883 CGATTTACTCAGGAAGTCCAAGTGACTGAAGCCCGTTGCTTCTACGGTTTCCAGATTGCC 86824 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || || || |||||||||||||| |||| || || |||||||||||| Sbjct 86823 ATGGAAAACATCCACTCTGAAATGTACAGTCTGTTGATTGACACCTACATCAAAGAT 86767 >seq19302 Length=2714443 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47226 TTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAA 47285 |||||||||| ||| |||| || |||||| || | |||||||| ||||||||||| |||| Sbjct 1839029 TTTTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTCGGATTAGACAATGCCGGAA 1838970 Query 47286 AAACGGCATTACTCCACATGCTCAAA 47311 |||| |||| | |||||||| ||| Sbjct 1838969 AAACAACATTGTTGCACATGCTTAAA 1838944 >seq11759 Length=1730004 Score = 82.4 bits (90), Expect = 6e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| ||||| |||| |||||| ||| ||||||||||| |||| ||||| Sbjct 149264 TTTGTCATTTTTCCTATTCAGTATCCTGACATCTGGAAAATGTACAAACAAGCTCAGGCT 149205 Query 43760 TCATTTTGGACAG 43772 ||||| ||||||| Sbjct 149204 TCATTCTGGACAG 149192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397040956820410