Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq77944 111 2e-19 seq3398 111 2e-19 seq19301 98.7 1e-15 seq11199 84.2 3e-11 >seq77944 Length=846 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| Sbjct 148 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 89 Query 118799 CAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATCCTTGTAAAGCATGTATGGCGTCC 118857 || ||||| || || | |||| | || || |||||||||||||||||||| || || | Sbjct 88 CAGGTTCTGCTGGTT-GCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGC 30 Query 118858 CCGTCTCCGTTTGGGACT 118875 | ||||| || || |||| Sbjct 29 CGGTCTCTGTCTGAGACT 12 >seq3398 Length=854497 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| Sbjct 23557 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 23498 Query 118799 CAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATCCTTGTAAAGCATGTATGGCGTCC 118857 || ||||| || || | |||| | || || |||||||||||||||||||| || || | Sbjct 23497 CAGGTTCTGCTGGTT-GCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGC 23439 Query 118858 CCGTCTCCGTTTGGGACT 118875 | ||||| || || |||| Sbjct 23438 CGGTCTCTGTCTGAGACT 23421 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | || || ||||| | |||||||||| |||| ||| || || |||||| Sbjct 30036 TAGATGTTGCTAGTATACGGCTCGATTGACTCATTGTTGCCCAGGATCTGAGCAGTGGAG 29977 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 || ||||||||||| |||| || || |||||||| Sbjct 29976 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTACG 29942 >seq19301 Length=1192634 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||||||| |||||||||| ||| || ||||||||||| | || |||||||| Sbjct 383136 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 383195 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 || ||||| || || ||| ||| || ||||||||||| |||||||| || || || Sbjct 383196 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 383255 Query 118859 CGTCTCCGTTTGGGACT 118875 ||||| || || |||| Sbjct 383256 GGTCTCTGTCTGAGACT 383272 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||||||||| |||||||||| |||| ||| || || |||||| Sbjct 381083 TAGATGTTGCTAGTGTATGGCTCAATTGACTCATTGTTTCCCAGGATCTGAGCAGTGGAG 381142 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 || |||||||| || |||| || || |||||||| Sbjct 381143 GCAGTGGGCATAGGAGCCAGCAGCAGACTGTTACG 381177 >seq11199 Length=1679328 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||||||||| ||| || || || ||||| || || | |||| Sbjct 643754 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 643695 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||||||| | || ||| |||||| |||||||||||||| || ||||| Sbjct 643694 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 643646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617772840439920