Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq19301 93.3 5e-14
seq85036 91.5 2e-13
seq3398 91.5 2e-13
seq16819 89.7 6e-13
seq77944 84.2 2e-11
seq6006 84.2 2e-11
>seq19301
Length=1192634
Score = 93.3 bits (102), Expect = 5e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164
|| ||||||||||| ||| | ||||||||||| | ||||| |||||||||||| |
Sbjct 383161 ATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGG 383220
Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
|| ||||| ||||||||| |||||| || || ||||||||
Sbjct 383221 TTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTC 383261
>seq85036
Length=2202
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 19244 CAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAG 19303
|| ||||| || || ||||| | ||||||||||||||||| |||||||| ||||| ||
Sbjct 577 CAAATGTCTAGTTGCTTCCTGCTTGCTATGAAGGATGACAGTATTGAGGGGATCTATGAC 636
Query 19304 ACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351
|| || ||| ||||||| | ||| || |||| | || |||||||||
Sbjct 637 ACCCTGAAGCAGTGCGCCCTCATTTCTAAGTCTGCGGGAGGTATCGGG 684
>seq3398
Length=854497
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 19244 CAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAG 19303
|| ||||| || || ||||| | ||||||||||||||||| |||||||| ||||| ||
Sbjct 21783 CAAATGTCTAGTTGCTTCCTGCTTGCTATGAAGGATGACAGTATTGAGGGGATCTATGAC 21842
Query 19304 ACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351
|| || ||| ||||||| | ||| || |||| | || |||||||||
Sbjct 21843 ACCCTGAAGCAGTGCGCCCTCATTTCTAAGTCTGCGGGAGGTATCGGG 21890
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164
|||||||||||||| ||| | || |||||||| | ||||| ||||||||| || |
Sbjct 23532 ATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGG 23473
Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
|| ||||| |||||||| |||||| || || ||||||||
Sbjct 23472 TTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 23432
>seq16819
Length=1945512
Score = 89.7 bits (98), Expect = 6e-13
Identities = 86/108 (80%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049
|||||||| ||| ||||||||||||||||| ||||| || || | |||||||||||||
Sbjct 739044 GCTTTTGC-TGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGGCT 739102
Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097
|| ||| | || |||||||| || || | |||||||| || || ||
Sbjct 739103 AAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTAT 739150
>seq77944
Length=846
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164
|||||||||||||| ||| | || |||||||| | ||||| ||||||||| || |
Sbjct 123 ATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGG 64
Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
|| ||||| |||||||| |||||| || || ||||||||
Sbjct 63 TTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 23
>seq6006
Length=139621
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/108 (79%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049
|||||||| ||| ||||||||||||||||| || || || || | |||||||||||||
Sbjct 86283 GCTTTTGC-TGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCTTCTATTTTCTGGCT 86225
Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097
|| ||| | || |||||||| || || | |||||||| || || ||
Sbjct 86224 AAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTAT 86177
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398
||| | || ||||| |||| ||||||| ||| || ||||| || |||||||||||||||
Sbjct 85502 GTGGAAAATCCTTTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTT 85443
Query 60399 GAGAAGCGGGTCGGGGATTA 60418
|||||||| ||||| || ||
Sbjct 85442 GAGAAGCGAGTCGGCGAGTA 85423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547937316226080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |