Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq19301 93.3 5e-14 seq85036 91.5 2e-13 seq3398 91.5 2e-13 seq16819 89.7 6e-13 seq77944 84.2 2e-11 seq6006 84.2 2e-11 >seq19301 Length=1192634 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || ||||||||||| ||| | ||||||||||| | ||||| |||||||||||| | Sbjct 383161 ATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGG 383220 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||| ||||||||| |||||| || || |||||||| Sbjct 383221 TTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTC 383261 >seq85036 Length=2202 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 19244 CAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAG 19303 || ||||| || || ||||| | ||||||||||||||||| |||||||| ||||| || Sbjct 577 CAAATGTCTAGTTGCTTCCTGCTTGCTATGAAGGATGACAGTATTGAGGGGATCTATGAC 636 Query 19304 ACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || || ||| ||||||| | ||| || |||| | || ||||||||| Sbjct 637 ACCCTGAAGCAGTGCGCCCTCATTTCTAAGTCTGCGGGAGGTATCGGG 684 >seq3398 Length=854497 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 19244 CAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAG 19303 || ||||| || || ||||| | ||||||||||||||||| |||||||| ||||| || Sbjct 21783 CAAATGTCTAGTTGCTTCCTGCTTGCTATGAAGGATGACAGTATTGAGGGGATCTATGAC 21842 Query 19304 ACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || || ||| ||||||| | ||| || |||| | || ||||||||| Sbjct 21843 ACCCTGAAGCAGTGCGCCCTCATTTCTAAGTCTGCGGGAGGTATCGGG 21890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 |||||||||||||| ||| | || |||||||| | ||||| ||||||||| || | Sbjct 23532 ATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGG 23473 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||| |||||||| |||||| || || |||||||| Sbjct 23472 TTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 23432 >seq16819 Length=1945512 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 |||||||| ||| ||||||||||||||||| ||||| || || | ||||||||||||| Sbjct 739044 GCTTTTGC-TGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGGCT 739102 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | || |||||||| || || | |||||||| || || || Sbjct 739103 AAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTAT 739150 >seq77944 Length=846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 |||||||||||||| ||| | || |||||||| | ||||| ||||||||| || | Sbjct 123 ATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGG 64 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||| |||||||| |||||| || || |||||||| Sbjct 63 TTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 23 >seq6006 Length=139621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 |||||||| ||| ||||||||||||||||| || || || || | ||||||||||||| Sbjct 86283 GCTTTTGC-TGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCTTCTATTTTCTGGCT 86225 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | || |||||||| || || | |||||||| || || || Sbjct 86224 AAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTAT 86177 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398 ||| | || ||||| |||| ||||||| ||| || ||||| || ||||||||||||||| Sbjct 85502 GTGGAAAATCCTTTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTT 85443 Query 60399 GAGAAGCGGGTCGGGGATTA 60418 |||||||| ||||| || || Sbjct 85442 GAGAAGCGAGTCGGCGAGTA 85423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547937316226080