Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11831 86.0 7e-12 seq85036 82.4 8e-11 seq3398 82.4 8e-11 >seq11831 Length=614722 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | |||||| ||||| || || || | || || |||||||| Sbjct 557321 GTGAAGATGTAACGAGGGCTGGCAGCATCTTTCCCGCCGTTGATACGGGTACCAAACTGA 557380 Query 152089 CC-AGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||| |||| |||| ||||| |||||| |||||| || ||||| ||||||||||| Sbjct 557381 CCGAGA-GGCTGAAGGATGTTGATATTGTTGCTGCCCACAAAGTTCTGGGCCAAATTCAC 557439 Query 152148 AATCGT 152153 || || Sbjct 557440 GATAGT 557445 >seq85036 Length=2202 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 53320 TCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGA 53379 ||| ||||| || ||||||||| | || |||||||||||| || || || ||||| || Sbjct 576 TCAAATGTCTAGTTGCTTCCTGCTTGCTATGAAGGATGACAGTATTGAGGGGATCTATGA 635 Query 53380 GACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 || || ||| |||| |||| ||| || |||| |||| |||||||| Sbjct 636 CACCCTGAAGCAGTGCGCCCTCATTTCTAAGTCTGCGGGAGGTATCGG 683 >seq3398 Length=854497 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 53320 TCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGA 53379 ||| ||||| || ||||||||| | || |||||||||||| || || || ||||| || Sbjct 21782 TCAAATGTCTAGTTGCTTCCTGCTTGCTATGAAGGATGACAGTATTGAGGGGATCTATGA 21841 Query 53380 GACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 || || ||| |||| |||| ||| || |||| |||| |||||||| Sbjct 21842 CACCCTGAAGCAGTGCGCCCTCATTTCTAAGTCTGCGGGAGGTATCGG 21889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546629917983600