Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq46 185 1e-41 seq13143 179 4e-40 seq20611 150 2e-31 seq1581 147 2e-30 seq16819 91.5 2e-13 seq6006 87.8 2e-12 >seq46 Length=2207375 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || || || ||||||||| | | Sbjct 2031671 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2031730 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || |||||||| || |||||||| || |||||||| |||||| Sbjct 2031731 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 2031790 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| || || |||| || ||||| | ||||| || Sbjct 2031791 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 2031850 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| |||||||||| || || Sbjct 2031851 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTTCGTGGCGG 2031897 Score = 179 bits (198), Expect = 4e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| || || || ||||||||| | | Sbjct 2030554 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2030613 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||| |||||||| || |||||||| || |||||||| |||||| Sbjct 2030614 GACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 2030673 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2030674 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 2030733 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| |||||||| || || || Sbjct 2030734 ATCCAGAAGGAGTCCACTCTCCACCTGGT 2030762 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| || |||||||| || ||| | || |||||| | || Sbjct 2031443 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACTTTGGAAGTTGAGCCCAGT 2031502 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || |||||||| || ||| Sbjct 2031503 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 2031562 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 2031563 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCTGACTACAAC 2031622 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || | ||||| | ||||| Sbjct 2031623 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGTCTGAGAGGTGG 2031669 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| || |||||||| || || || ||||||||| | | Sbjct 2030782 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2030841 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||| ||||| || |||||||| |||||| Sbjct 2030842 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 2030901 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2030902 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 2030961 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || || | ||||| | ||||| Sbjct 2030962 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGTCTGAGAGGTGG 2031008 Score = 149 bits (164), Expect = 7e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||| ||||| | || || || || || || || ||||||||| | | || | ||| | Sbjct 2031225 TTGTGAAGACCTTGACTGGTAAAACCATCACCCTCGAGGTTGAGCCCAGCGACACCATAG 2031284 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 || | ||||| || || ||||||||||| || |||||||| |||||||||||||| | Sbjct 2031285 AGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGA 2031344 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 | |||||||||||||| || || |||| || ||||| | ||||| || |||| |||| Sbjct 2031345 TCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGG 2031404 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || || | ||||| | ||||| Sbjct 2031405 AGTCCACTCTCCACCTGGTGCTCCGTCTGAGAGGTGG 2031441 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || || || ||||||||| | | Sbjct 2031010 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2031069 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||| ||||| || |||||||| |||||| Sbjct 2031070 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 2031129 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || || || | || |||| || || || | ||||| || Sbjct 2031130 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 2031189 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 |||| || || ||||| || ||||| ||| ||||| Sbjct 2031190 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGT 2031225 >seq13143 Length=1991197 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || || ||||||||| | | Sbjct 1626388 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1626447 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || |||||||| |||||| Sbjct 1626448 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 1626507 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || || || | ||||| || Sbjct 1626508 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAAGATGGACGCACGCTGTCCGACTACAAC 1626567 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| |||||||||| || || Sbjct 1626568 ATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGTCTTCGTGGGGG 1626614 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| || |||||||| || || || ||||||||| | | Sbjct 1624594 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1624653 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || |||||||| || |||||||| || || ||||| |||||| Sbjct 1624654 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 1624713 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| | || |||| || || || | || || || Sbjct 1624714 CAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTACAAC 1624773 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| ||| ||||||| | ||||| Sbjct 1624774 ATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 1624820 Score = 132 bits (146), Expect = 5e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || |||||||||||| | || Sbjct 1625613 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1625672 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || |||||||| || |||||||| || |||||||| |||||| Sbjct 1625673 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 1625732 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 |||||||| || || |||||| Sbjct 1625733 CAGCGTCTGATCTTAGCTGGT 1625753 Score = 122 bits (134), Expect = 1e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| || | || |||||||| || |||||||| || || ||||| ||||||||||| Sbjct 1625450 CATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCG 1625509 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 ||| || |||||||| ||||| | || |||| || || || | || || || |||| Sbjct 1625510 TCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTACAACATCCA 1625569 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||| || ||||| ||| ||||||| | ||||| Sbjct 1625570 GAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 1625611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 27481 TTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTT 27540 || ||||| || || || || ||||| || |||||||| |||||||||||| | || || Sbjct 1626235 TTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTC 1626294 Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 || || || || | || |||| || || || | ||||| || |||| || || ||| Sbjct 1626295 GCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAAGAGTCC 1626354 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| ||| ||||||| | ||||| Sbjct 1626355 ACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 1626386 >seq20611 Length=922441 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || || |||||||||||| || || Sbjct 520543 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 520484 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | |||||||| || ||||| || || || ||||| || |||||| Sbjct 520483 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAAGAAGGTATTCCCCCTGACCAG 520424 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| ||| || | | ||||| || Sbjct 520423 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGTCGCACATTGTCTGACTACAAC 520364 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 ||||||| || ||||| | ||||| || |||||||| Sbjct 520363 ATCCAAAAAGAGTCCACCTTGCATCTGGTGTTGCGTCT 520326 Score = 138 bits (152), Expect = 1e-27 Identities = 165/223 (74%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||| ||||| ||||||||||| || || || || ||||| || || |||||||||||| Sbjct 520776 TATAGATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGC 520717 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 || | || | |||| || | |||||||| || |||||||| || || ||||| || | Sbjct 520716 CAAGCGACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTG 520657 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 |||||||| | | || ||||| || || || || || |||| || || | | |||| Sbjct 520656 ACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACT 520597 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | || |||| || || |||||| | ||||| || ||||||| Sbjct 520596 ACAACATCCAGAAAGAGTCCACTTTGCATCTTGTGCTGCGTCT 520554 >seq1581 Length=2594311 Score = 147 bits (162), Expect = 2e-30 Identities = 167/223 (75%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||| ||||| ||||||||||| || || || |||||||| || || |||||||| ||| Sbjct 1373402 TATAGATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGC 1373343 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 || | || | ||||| || | ||||| || || |||||||| || || ||||| || | Sbjct 1373342 CAAGCGACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTG 1373283 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 |||||||| | || || || ||||| || || || || |||| ||| || || | |||| Sbjct 1373282 ACCAGCAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACT 1373223 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | || |||| || || ||||| | ||||| || ||||||| Sbjct 1373222 ACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCT 1373180 >seq16819 Length=1945512 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| |||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 739044 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGGCTA 739103 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| | || || ||||| || || | || || || || || ||| Sbjct 739104 AAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATC 739151 >seq6006 Length=139621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| |||||||||||| |||||||| ||||| || |||||||||||||||| Sbjct 86283 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCTTCTATTTTCTGGCTA 86224 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| | || || ||||| || || | || || || || || ||| Sbjct 86223 AAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATC 86176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569699583303840