Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq46 185 1e-41
seq13143 179 4e-40
seq20611 150 2e-31
seq1581 147 2e-30
seq16819 91.5 2e-13
seq6006 87.8 2e-12
>seq46
Length=2207375
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | || |||||||| || || || ||||||||| | |
Sbjct 2031671 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2031730
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | || |||||||| || |||||||| || |||||||| ||||||
Sbjct 2031731 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 2031790
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||||||||| || || |||| || ||||| | ||||| ||
Sbjct 2031791 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 2031850
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || ||||| ||| |||||||||| || ||
Sbjct 2031851 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTTCGTGGCGG 2031897
Score = 179 bits (198), Expect = 4e-40
Identities = 165/209 (79%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| |||||||| || |||||||| || || || ||||||||| | |
Sbjct 2030554 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2030613
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| |||| |||||||| || |||||||| || |||||||| ||||||
Sbjct 2030614 GACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 2030673
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 2030674 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 2030733
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614
|||| ||||| |||||||| || || ||
Sbjct 2030734 ATCCAGAAGGAGTCCACTCTCCACCTGGT 2030762
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| || |||||||| || ||| | || |||||| | ||
Sbjct 2031443 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACTTTGGAAGTTGAGCCCAGT 2031502
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||||| || || ||||||||||| || |||||||| || |||
Sbjct 2031503 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 2031562
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| || ||||||| || ||||| | ||||| ||
Sbjct 2031563 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCTGACTACAAC 2031622
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| || || || | ||||| | |||||
Sbjct 2031623 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGTCTGAGAGGTGG 2031669
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| || |||||||| || || || ||||||||| | |
Sbjct 2030782 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2030841
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||||| || || ||||| ||||| || |||||||| ||||||
Sbjct 2030842 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 2030901
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 2030902 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 2030961
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| || || || | ||||| | |||||
Sbjct 2030962 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGTCTGAGAGGTGG 2031008
Score = 149 bits (164), Expect = 7e-31
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475
|||| ||||| | || || || || || || || ||||||||| | | || | ||| |
Sbjct 2031225 TTGTGAAGACCTTGACTGGTAAAACCATCACCCTCGAGGTTGAGCCCAGCGACACCATAG 2031284
Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535
|| | ||||| || || ||||||||||| || |||||||| |||||||||||||| |
Sbjct 2031285 AGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGA 2031344
Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595
| |||||||||||||| || || |||| || ||||| | ||||| || |||| ||||
Sbjct 2031345 TCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGG 2031404
Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| || || || | ||||| | |||||
Sbjct 2031405 AGTCCACTCTCCACCTGGTGCTCCGTCTGAGAGGTGG 2031441
Score = 132 bits (146), Expect = 5e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | || |||||||| || || || ||||||||| | |
Sbjct 2031010 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2031069
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||||| || || ||||| ||||| || |||||||| ||||||
Sbjct 2031070 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 2031129
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || || || || || | || |||| || || || | ||||| ||
Sbjct 2031130 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 2031189
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621
|||| || || ||||| || ||||| ||| |||||
Sbjct 2031190 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGT 2031225
>seq13143
Length=1991197
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || || || |||||||| || || || ||||||||| | |
Sbjct 1626388 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1626447
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || ||||||||||| || |||||||| ||||||
Sbjct 1626448 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAG 1626507
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| || || |||| || || || | ||||| ||
Sbjct 1626508 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAAGATGGACGCACGCTGTCCGACTACAAC 1626567
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || ||||| ||| |||||||||| || ||
Sbjct 1626568 ATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGTCTTCGTGGGGG 1626614
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| || |||||||| || || || ||||||||| | |
Sbjct 1624594 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1624653
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | || |||||||| || |||||||| || || ||||| ||||||
Sbjct 1624654 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 1624713
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || |||||||| ||||| | || |||| || || || | || || ||
Sbjct 1624714 CAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTACAAC 1624773
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| || ||||| ||| ||||||| | |||||
Sbjct 1624774 ATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 1624820
Score = 132 bits (146), Expect = 5e-26
Identities = 114/141 (81%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || |||||||| || || |||||||||||| | ||
Sbjct 1625613 ATGCAGATCTTCGTCAAGACACTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1625672
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | || |||||||| || |||||||| || |||||||| ||||||
Sbjct 1625673 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 1625732
Query 27526 CAGCGTCTAATTTTTGCTGGT 27546
|||||||| || || ||||||
Sbjct 1625733 CAGCGTCTGATCTTAGCTGGT 1625753
Score = 122 bits (134), Expect = 1e-22
Identities = 124/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530
||||| || | || |||||||| || |||||||| || || ||||| |||||||||||
Sbjct 1625450 CATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGCG 1625509
Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590
||| || |||||||| ||||| | || |||| || || || | || || || ||||
Sbjct 1625510 TCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTACAACATCCA 1625569
Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||||||| || ||||| ||| ||||||| | |||||
Sbjct 1625570 GAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 1625611
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 27481 TTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTT 27540
|| ||||| || || || || ||||| || |||||||| |||||||||||| | || ||
Sbjct 1626235 TTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTC 1626294
Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600
|| || || || | || |||| || || || | ||||| || |||| || || |||
Sbjct 1626295 GCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAAGAGTCC 1626354
Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || ||||| ||| ||||||| | |||||
Sbjct 1626355 ACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 1626386
>seq20611
Length=922441
Score = 150 bits (166), Expect = 2e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || |||||||| || || |||||||||||| || ||
Sbjct 520543 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 520484
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | |||||||| || ||||| || || || ||||| || ||||||
Sbjct 520483 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAAGAAGGTATTCCCCCTGACCAG 520424
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || ||||| || || || || || |||| ||| || | | ||||| ||
Sbjct 520423 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGTCGCACATTGTCTGACTACAAC 520364
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
||||||| || ||||| | ||||| || ||||||||
Sbjct 520363 ATCCAAAAAGAGTCCACCTTGCATCTGGTGTTGCGTCT 520326
Score = 138 bits (152), Expect = 1e-27
Identities = 165/223 (74%), Gaps = 1/223 (0%)
Strand=Plus/Minus
Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460
|||| ||||| ||||||||||| || || || || ||||| || || ||||||||||||
Sbjct 520776 TATAGATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGC 520717
Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520
|| | || | |||| || | |||||||| || |||||||| || || ||||| || |
Sbjct 520716 CAAGCGACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTG 520657
Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580
|||||||| | | || ||||| || || || || || |||| || || | | ||||
Sbjct 520656 ACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACT 520597
Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
| || |||| || || |||||| | ||||| || |||||||
Sbjct 520596 ACAACATCCAGAAAGAGTCCACTTTGCATCTTGTGCTGCGTCT 520554
>seq1581
Length=2594311
Score = 147 bits (162), Expect = 2e-30
Identities = 167/223 (75%), Gaps = 1/223 (0%)
Strand=Plus/Minus
Query 27402 TATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460
|||| ||||| ||||||||||| || || || |||||||| || || |||||||| |||
Sbjct 1373402 TATAGATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGC 1373343
Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520
|| | || | ||||| || | ||||| || || |||||||| || || ||||| || |
Sbjct 1373342 CAAGCGACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTG 1373283
Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580
|||||||| | || || || ||||| || || || || |||| ||| || || | ||||
Sbjct 1373282 ACCAGCAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACT 1373223
Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
| || |||| || || ||||| | ||||| || |||||||
Sbjct 1373222 ACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCT 1373180
>seq16819
Length=1945512
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785
|||||||| |||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 739044 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGGCTA 739103
Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833
|| ||| | || || ||||| || || | || || || || || |||
Sbjct 739104 AAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATC 739151
>seq6006
Length=139621
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785
|||||||| |||||||||||| |||||||| ||||| || ||||||||||||||||
Sbjct 86283 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCTTCTATTTTCTGGCTA 86224
Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833
|| ||| | || || ||||| || || | || || || || || |||
Sbjct 86223 AAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATC 86176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569699583303840
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