Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq46 120 3e-22 seq13143 104 2e-17 seq1581 104 2e-17 seq20611 96.9 3e-15 >seq46 Length=2207375 Score = 120 bits (132), Expect = 3e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | ||| | ||||| || || ||| ||| || || || || || || Sbjct 2030784 CATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 2030725 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || ||| | || || ||||| ||||| || || || |||||||||||||| | Sbjct 2030724 GGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 2030665 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || || ||||| |||||| ||| | || | | || ||||| | ||| Sbjct 2030664 AGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTC 2030605 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGC 39292 || || | ||||| | || || |||||||| || |||||||| ||||||||||||| Sbjct 2030604 AACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGC 2030546 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||| || || ||| ||| || || || || || |||| Sbjct 2031008 CCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2030949 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || ||||| ||||| || || || |||||||||||||| | || Sbjct 2030948 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 2030889 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || || ||| ||| || |||| || | | || ||||| | ||| || Sbjct 2030888 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 2030829 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | || || |||||||| || || ||||| ||||| Sbjct 2030828 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2030782 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||| || || ||| ||| || || || || || || | Sbjct 2031669 CCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2031610 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || ||||| ||||| || || || ||||||||||| || | || Sbjct 2031609 AGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 2031550 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| ||| || |||| || | | || || || | ||| || Sbjct 2031549 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACT 2031490 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || |||||||| || || ||||| ||||| Sbjct 2031489 TCCAAAGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2031443 >seq13143 Length=1991197 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | || | ||| || ||| || || || || || ||||| | Sbjct 1624820 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 1624761 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || | ||| ||||| ||||| || |||||||||||||| | || Sbjct 1624760 AGCGTGCGTCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 1624701 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| |||||| ||||| || | | || ||||| | ||| || Sbjct 1624700 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 1624641 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGC 39292 || | ||||| | || || |||||||| || || ||||| ||||||||||||| Sbjct 1624640 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATCTTTACGC 1624586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || |||| || || ||| | || |||||||| Sbjct 1626591 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCAAGCTG 1626532 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| || || || |||||||||||||| | || | || || |||||| ||| || Sbjct 1626531 CTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 1626472 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | || | | || ||||| | ||| || || | ||||| | || || || Sbjct 1626471 GGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 1626412 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| |||||||| ||||| Sbjct 1626411 CAGGGTTTTCACAAAGATCTGCAT 1626388 >seq1581 Length=2594311 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||||| ||| | ||| |||||| || || || || || | Sbjct 1373171 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1373230 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || || ||||||||||| || || || || | ||||||||| | ||| Sbjct 1373231 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1373290 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||||||||| ||| || |||| || | | || ||||| | ||| || Sbjct 1373291 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACC 1373350 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || | ||||| | || || || || ||||| |||||||| ||||||| || Sbjct 1373351 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATCTATA 1373402 >seq20611 Length=922441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||| | ||| | ||| |||||| || || || || || Sbjct 520541 CATGCCTCCCCTGAGACGCAGCACAAGATGCAAAGTGGACTCTTTCTGGATGTTGTAGTC 520600 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | | ||| || | || || ||||||||||| ||||| || | | ||||||||| | Sbjct 520601 AGACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 520660 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||||||||| ||| || |||| || | | || ||||| | ||| Sbjct 520661 GGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTC 520720 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || | ||||| | || || || || ||||| |||||||| ||||||| || Sbjct 520721 AACCTCAAGGGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCATCTATA 520776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429097047275666